View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_28 (Length: 237)
Name: NF8382_low_28
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3312718 - 3312497
Alignment:
| Q |
1 |
taggcaacaatgattgagtacaatggatcaatacttgaaaatcatttaaaattctaatgataactaacatggatctttaaaagtagaagttcacggtcct |
100 |
Q |
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| T |
3312718 |
taggcaacaatgattgagtacaatggatcaatacttgaaaatcatttaaaattctaacgataactaacatggatctttaaaagtagaagttcgcggttct |
3312619 |
T |
|
| Q |
101 |
ctttattataagatctaagagagtatccttatcaatctcatcttttgatgtaaaatcaataagtcatcaatcgcacatgcacaaagttcactggttttat |
200 |
Q |
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| T |
3312618 |
ctttattataagatctaagagagtgtccctatcaatctcatcttttgatgtaaaatcaataagccatcaatcgcacatgcacaaagttcactggttttat |
3312519 |
T |
|
| Q |
201 |
agtaatccaaaagtgaagatgt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3312518 |
agtaatccaaaagtgaagatgt |
3312497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3319829 - 3319639
Alignment:
| Q |
1 |
taggcaacaatgattgagtacaatggatcaatacttgaaaatcatttaaaattctaatgataactaacatggatctttaaaagtagaagttcacggtcct |
100 |
Q |
| |
|
|||||| |||||||||| || || |||| ||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||| ||| | | |
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| T |
3319829 |
taggcatcaatgattgaatatgatagatctatacttgaaaaccatttaaaattataacgataactaacatggatctttagaagtagaagtttacgatttt |
3319730 |
T |
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| Q |
101 |
ctttattataagatctaagagagtatccttatcaatctcatcttttgatgtaaaatcaataagtcatcaatcgcacatgcacaaagttcac |
191 |
Q |
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|| |||||||||||||||||||||||| |||| |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| |
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| T |
3319729 |
tttaattataagatctaagagagtatccctatcggtctcatcttttggtgtaaaatcaataaatcatcaatcgcacttgcacaaagttcac |
3319639 |
T |
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