View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8382_low_3 (Length: 579)

Name: NF8382_low_3
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8382_low_3
NF8382_low_3
[»] chr2 (1 HSPs)
chr2 (13-564)||(10297586-10298143)
[»] chr7 (6 HSPs)
chr7 (159-280)||(48663032-48663152)
chr7 (159-283)||(29814348-29814470)
chr7 (163-283)||(21058933-21059053)
chr7 (12-57)||(43789991-43790036)
chr7 (182-283)||(21044906-21045006)
chr7 (245-277)||(41100406-41100438)
[»] chr3 (5 HSPs)
chr3 (220-276)||(51504534-51504591)
chr3 (245-283)||(38272686-38272724)
chr3 (244-281)||(37795534-37795571)
chr3 (235-282)||(245660-245707)
chr3 (234-280)||(8559651-8559697)
[»] chr8 (2 HSPs)
chr8 (245-283)||(5363584-5363622)
chr8 (240-281)||(18585608-18585649)
[»] chr5 (2 HSPs)
chr5 (245-281)||(14874085-14874121)
chr5 (234-282)||(28975228-28975276)
[»] chr4 (4 HSPs)
chr4 (245-276)||(17879205-17879236)
chr4 (244-283)||(49370213-49370252)
chr4 (248-281)||(22523001-22523034)
chr4 (212-283)||(38702670-38702741)
[»] chr1 (3 HSPs)
chr1 (244-283)||(36282282-36282321)
chr1 (244-281)||(46483753-46483790)
chr1 (227-278)||(5790894-5790946)
[»] chr6 (1 HSPs)
chr6 (249-281)||(7782645-7782677)


Alignment Details
Target: chr2 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 564
Target Start/End: Complemental strand, 10298143 - 10297586
Alignment:
Q  13 atggacatcaagttttgcttgcgcagcttctaagagcttatattcttcccttcatacaatcaaacatgtaaagattcgaagccccaacaaaaacaagaag 112  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10298143 atggacaacaagttttgcttgcgcagcttctaagagcttatattcttcccttcatacaatcaaacatgtaaagattcgaagccccaacaaaaacaaaaag 10298044  T
Q  113 aattaaggatgtgtctgaggattttggatagcta--actctattttggtatttgagatttaaaataaattaaaagaataacatgata-atgatcatataa 209  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||    
T  10298043 aattaaggatgtgtctgaggattttggatagctataactctattttggtatttgagatttaaaaaagattaaaagaataacatgatagatgatcatataa 10297944  T
Q  210 cacatttcactcacactttaatttatttttaaagtattttatagcttccttaatttagaaaagaaaaataagtcggtctttccaaaattcttcgccaaag 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10297943 cacatttcactcacactttaatttatttttaaagtattttatagcttccttaatttagaaaagaaaaataagtcagtctttccaaaattcttcgccaaag 10297844  T
Q  310 aataccataaagaaccggggcatcagcctaacctagttatcatcaattcattgacaactgaagattgtgtactttggtacagtctaaatatttcaagata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10297843 aataccataaagaaccggggcatcagcctaacctagttatcatcaattcattgacaactgaagattgtgtactttggtacagtctaaatatttcaagata 10297744  T
Q  410 acacttttaacataagaagttacaatttgacttttctcagccaacccaagaaaaacattgtgcagttcatc---agggaaatggttttcttttttgacag 506  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||   | ||||||||||||||||||||||||    
T  10297743 acacttttaacataagaagttacaatttgacttttgttagccaacccaagaaaagcattgtgcagttcatcaatatggaaatggttttcttttttgacag 10297644  T
Q  507 attcatctcataaatgtcttgtccaatttatgtcgaatagtttttgtcataatctatc 564  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10297643 attcatctcataaatgtcttgtccaatttatgtcgaatagtttttgtcataatctatc 10297586  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 159 - 280
Target Start/End: Complemental strand, 48663152 - 48663032
Alignment:
Q  159 tatttgagatttaaaataaattaaaagaataacatgata-atgatcatataacacatttcactcacactttaatttattttta-aagtattttatagctt 256  Q
    |||||||| ||| ||| ||||| |||||||||||||||| ||||| | ||||||  ||||| | | |||| |||||||||| | ||  ||||||||||||    
T  48663152 tatttgaggttttaaagaaattgaaagaataacatgatagatgattaaataaca--tttcaattatactt-aatttattttgagaaacattttatagctt 48663056  T
Q  257 ccttaatttagaaaagaaaaataa 280  Q
    ||||||||||||||||||||||||    
T  48663055 ccttaatttagaaaagaaaaataa 48663032  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 29814348 - 29814470
Alignment:
Q  159 tatttgagatttaaaataaattaaaagaataacatgata-atgatcatataacacatttcactcacactttaatttatttttaaagtattttatagcttc 257  Q
    |||||||||||| ||| ||||| || ||||||||||||| ||||||||||||||  |||||  ||||||| | |||||||| | | |||||| ||| |||    
T  29814348 tatttgagattttaaa-aaattgaacgaataacatgatagatgatcatataaca--tttcaaccacactt-agtttattttcagaatattttttagtttc 29814443  T
Q  258 cttaatttag-aaaagaaaaataagtc 283  Q
    |||||||||| ||||||||||| ||||    
T  29814444 cttaatttagaaaaagaaaaatgagtc 29814470  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 283
Target Start/End: Original strand, 21058933 - 21059053
Alignment:
Q  163 tgagatttaaaataaattaaaagaataacatgata-atgatcatataacacatttcactcacactttaatttatttttaaa--gtattttatagcttcct 259  Q
    ||||||||  || ||||| | ||||||| |||||| |||||||| |||||  ||||| |||||||| ||||||||||||||  |   |||||||||||||    
T  21058933 tgagattttgaaaaaatttacagaataatatgatacatgatcatttaaca--tttcaatcacactt-aatttatttttaaaaagatatttatagcttcct 21059029  T
Q  260 taatttagaaaagaaaaataagtc 283  Q
    |||  ||||||||||||| |||||    
T  21059030 taagctagaaaagaaaaacaagtc 21059053  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 43789991 - 43790036
Alignment:
Q  12 gatggacatcaagttttgcttgcgcagcttctaagagcttatattc 57  Q
    |||||||| ||||| |||||||| ||||||||||||||| ||||||    
T  43789991 gatggacagcaagtcttgcttgcacagcttctaagagctcatattc 43790036  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 21044906 - 21045006
Alignment:
Q  182 aaagaataacatgata-atgatcatataacacatttcactcacactttaatttatttttaaagt-attttatagcttccttaatttagaaaagaaaaata 279  Q
    ||||||||| || ||| ||||||||||||||  ||| | |||||||| ||||||||||||||   | ||||||||||||||||  |||||||||| ||||    
T  21044906 aaagaataatatcatagatgatcatataaca--ttttaatcacactt-aatttatttttaaaaacaatttatagcttccttaagctagaaaagaataata 21045002  T
Q  280 agtc 283  Q
    ||||    
T  21045003 agtc 21045006  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 277
Target Start/End: Original strand, 41100406 - 41100438
Alignment:
Q  245 attttatagcttccttaatttagaaaagaaaaa 277  Q
    |||||||||||| ||||||||||||||||||||    
T  41100406 attttatagcttgcttaatttagaaaagaaaaa 41100438  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 276
Target Start/End: Complemental strand, 51504591 - 51504534
Alignment:
Q  220 tcacactttaatttattttta-aagtattttatagcttccttaatttagaaaagaaaa 276  Q
    |||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||    
T  51504591 tcacacttaaatttatttttagaaacattttatagcttccttaatttagaaaagaaaa 51504534  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 38272724 - 38272686
Alignment:
Q  245 attttatagcttccttaatttagaaaagaaaaataagtc 283  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  38272724 attttatagcttccttaatttaaaaaagaaaaataagtc 38272686  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 37795571 - 37795534
Alignment:
Q  244 tattttatagcttccttaatttagaaaagaaaaataag 281  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  37795571 tattttatagcttacttaatttagaaaagaaaaataag 37795534  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 282
Target Start/End: Complemental strand, 245707 - 245660
Alignment:
Q  235 tttttaaagtattttatagcttccttaatttagaaaagaaaaataagt 282  Q
    |||| ||| ||||||||||||| |||||||||| ||||||||||||||    
T  245707 ttttaaaaatattttatagcttgcttaatttagtaaagaaaaataagt 245660  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 280
Target Start/End: Original strand, 8559651 - 8559697
Alignment:
Q  234 atttttaaagtattttatagcttccttaatttagaaaagaaaaataa 280  Q
    |||||||||  |||||||||||| |||||||| ||||||||||||||    
T  8559651 atttttaaaacattttatagcttgcttaatttggaaaagaaaaataa 8559697  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 5363622 - 5363584
Alignment:
Q  245 attttatagcttccttaatttagaaaagaaaaataagtc 283  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  5363622 attttatagtttccttaatttagaaaagaaaaataagtc 5363584  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 18585608 - 18585649
Alignment:
Q  240 aaagtattttatagcttccttaatttagaaaagaaaaataag 281  Q
    |||| |||||||| |||| |||||||||||||||||||||||    
T  18585608 aaagcattttataacttctttaatttagaaaagaaaaataag 18585649  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 14874121 - 14874085
Alignment:
Q  245 attttatagcttccttaatttagaaaagaaaaataag 281  Q
    |||||||||||||||||||||||||||||||| ||||    
T  14874121 attttatagcttccttaatttagaaaagaaaagtaag 14874085  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 28975276 - 28975228
Alignment:
Q  234 atttttaaagtattttatagcttccttaatttagaaaagaaaaataagt 282  Q
    ||||| ||| ||||||||||| |  ||||||||||||||||||||||||    
T  28975276 attttaaaattattttatagcgtaattaatttagaaaagaaaaataagt 28975228  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 276
Target Start/End: Complemental strand, 17879236 - 17879205
Alignment:
Q  245 attttatagcttccttaatttagaaaagaaaa 276  Q
    ||||||||||||||||||||||||||||||||    
T  17879236 attttatagcttccttaatttagaaaagaaaa 17879205  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 49370252 - 49370213
Alignment:
Q  244 tattttatagcttccttaatttagaaaagaaaaataagtc 283  Q
    ||||||||||||| |||||||||||||||||||| |||||    
T  49370252 tattttatagcttgcttaatttagaaaagaaaaacaagtc 49370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 22523034 - 22523001
Alignment:
Q  248 ttatagcttccttaatttagaaaagaaaaataag 281  Q
    ||||||||| ||||||||||||||||||||||||    
T  22523034 ttatagctttcttaatttagaaaagaaaaataag 22523001  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 38702741 - 38702670
Alignment:
Q  212 catttcactcacactttaatttatttttaaa-gtattttatagcttccttaatttagaaaagaaaaataagtc 283  Q
    ||||||| |||||||| |||||||||| ||| | |||||||||||| |||| | |||| ||||||||||||||    
T  38702741 catttcaatcacactt-aatttattttcaaaagcattttatagctttcttagtgtagataagaaaaataagtc 38702670  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 36282321 - 36282282
Alignment:
Q  244 tattttatagcttccttaatttagaaaagaaaaataagtc 283  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  36282321 tattttatagctttcttaatttcgaaaagaaaaataagtc 36282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Complemental strand, 46483790 - 46483753
Alignment:
Q  244 tattttatagcttccttaatttagaaaagaaaaataag 281  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  46483790 tattttatagtttccttaatttaaaaaagaaaaataag 46483753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 278
Target Start/End: Original strand, 5790894 - 5790946
Alignment:
Q  227 ttaatttatttttaaagta-ttttatagcttccttaatttagaaaagaaaaat 278  Q
    |||||||| |||||||| | ||||||||||||||||||||| |||| ||||||    
T  5790894 ttaatttacttttaaagaaattttatagcttccttaatttacaaaataaaaat 5790946  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 7782677 - 7782645
Alignment:
Q  249 tatagcttccttaatttagaaaagaaaaataag 281  Q
    ||||||||||||||| |||||||||||||||||    
T  7782677 tatagcttccttaatatagaaaagaaaaataag 7782645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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