View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_31 (Length: 202)
Name: NF8382_low_31
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 11472594 - 11472479
Alignment:
| Q |
15 |
cagagacttacaaaggaaatgaggtatcaattagtccacccttcaaatatcctatcaactatttgattatattattttcttaccacaaattcaagctagt |
114 |
Q |
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| T |
11472594 |
cagagacttacaaaggaaatgaggtatcaattagtccacccttcaaatatcctatcaactatttcattatattattttcttaccacaaattcaagctagt |
11472495 |
T |
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| Q |
115 |
ttgttcatatttgaac |
130 |
Q |
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| T |
11472494 |
ttgttcatatttgaac |
11472479 |
T |
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