View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_4 (Length: 553)
Name: NF8382_low_4
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_4 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Original strand, 26371939 - 26372472
Alignment:
| Q |
1 |
tcttttgttgcagacgaagtggtgaacaccgcttctaactgatactcacacacacaactgcgaagtctcaagttttgttactaaaatgccaccttcacaa |
100 |
Q |
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| T |
26371939 |
tcttttgttgcagacgaagtggtgaacaccacttctaactgatactcacacacacaactgcgaggtctcaagttttgttactaaaatgcctccttcacaa |
26372038 |
T |
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| Q |
101 |
caaacacaacgttattgtgaggaag---aaattgttgctggagattttaagtgggggaacaaaagaggaattggtttgaaaaacaaagatacacagtttt |
197 |
Q |
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| T |
26372039 |
caaacacaacgttattgtgaggaagaagaaattgttggtggagattttaagtgggggaacaaaagaggaattggtgtgaaaaacaaacatacacagtttt |
26372138 |
T |
|
| Q |
198 |
atgattcttttgtttatgatggtgttgagtattttctgtatgattctgtttatttttaccacaccgatcatgttgaaacttccattggtaagcttgtcaa |
297 |
Q |
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| T |
26372139 |
atgattcttttgtttatgatggtgttgagtattttctgtatgattctgtttatttttaccacaccgatcatgttgaaacttccattggtaagcttgtcaa |
26372238 |
T |
|
| Q |
298 |
gatgtacgagactagtcgtgcaaagatgataagagttgtttggttttttcgtccttctgaaattcgtaattttcatagaggttacaagccgtgttggaat |
397 |
Q |
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| T |
26372239 |
gatgtacgagactagtcgtgcaaagatgataagagttgtttggttttttcgtccttctgaaattcgtaattttcatagaggttataagccttgttggaat |
26372338 |
T |
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| Q |
398 |
gagctgttcttggcttctgggaagggaaaaggtcttttcaacgtcaatctgctggtaattttaattcannnnnnnnatttatttgtatcactgacacttc |
497 |
Q |
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| T |
26372339 |
gagctgttcttggcttctgggaagggaaagggtctttttaacatcaatctgctggtaattttaattca---tttttatctatttgtatcactgacacttt |
26372435 |
T |
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| Q |
498 |
tgattgaagacaatacgtgtcagtgtctggcctgaca |
534 |
Q |
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| T |
26372436 |
tgattgaagacaatacgtgtcagtgtctggcctgaca |
26372472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1445 (Bit Score: 170; Significance: 6e-91; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 136 - 433
Target Start/End: Original strand, 1028 - 1325
Alignment:
| Q |
136 |
tggagattttaagtgggggaacaaaagaggaattggtttgaaaaacaaagatacacagttttatgattcttttgtttatgatggtgttgagtattttctg |
235 |
Q |
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| T |
1028 |
tggagattttaaatgggggaacaaaagaggaattggtgtgaagaataaagatacacagttctatgattcttttgtttatgaaggtgttgagtattttcta |
1127 |
T |
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| Q |
236 |
tatgattctgtttatttttaccacaccgatcatgttgaaacttccattggtaagcttgtcaagatgtacgagactagtcgtgcaaagatgataagagttg |
335 |
Q |
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| T |
1128 |
catgattgtgtttatttttaccacactgatcatgttgaaacttctattggtatgcttgtcaagatgtttgagaatggtcgtagaaagatgatcagagttg |
1227 |
T |
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| Q |
336 |
tttggttttttcgtccttctgaaattcgtaattttcatagaggttacaagccgtgttggaatgagctgttcttggcttctgggaagggaaaaggtctt |
433 |
Q |
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| T |
1228 |
tttggttctttcgtccttcggaaattcagagttttcatcgaagttatcagccgagttggaatgagttgttcttggcttctgggaaaggcaaaggtctt |
1325 |
T |
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