View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_8 (Length: 446)
Name: NF8382_low_8
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 37760412 - 37760276
Alignment:
| Q |
16 |
attctccaaaggtagcctatacatcatcaactatacaagttttcgagttttaaccatcaacttgttgatttgataaataaatatactaacttaatacatg |
115 |
Q |
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| T |
37760412 |
attcttcaaaggtaacctatacatcatcaactatacaagttttcgagttttaaccatcaacttgttgatttgataaataaacatactaacttaatacatg |
37760313 |
T |
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| Q |
116 |
taatgatcggtccaaatttcaaacataaaactgcata |
152 |
Q |
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| T |
37760312 |
taatgatcagtccaaatttcaaacataaaactgcata |
37760276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 37760055 - 37759993
Alignment:
| Q |
366 |
tattttaggaatttgttaagcagtcagttggcattgatgtggactggatttgaacactcatcc |
428 |
Q |
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| T |
37760055 |
tattttatgaatttgttaagcagtcagttggcattgatgtggaatggatttgaacactcatcc |
37759993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 37760135 - 37760092
Alignment:
| Q |
289 |
atagagtaatatagaaatgaaaattctgcaaacccttctttact |
332 |
Q |
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| T |
37760135 |
atagagtaatatagaaatgaaaattctgcaaacccttctttact |
37760092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 229
Target Start/End: Complemental strand, 37760233 - 37760196
Alignment:
| Q |
192 |
gaaagaggtacattattttgttgtcgagtgttagagac |
229 |
Q |
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| T |
37760233 |
gaaagaggtgcattattttgttgtcgagtgttagagac |
37760196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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