View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8382_low_9 (Length: 441)
Name: NF8382_low_9
Description: NF8382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8382_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 9130907 - 9130671
Alignment:
| Q |
1 |
agattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatggagttgg |
100 |
Q |
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| T |
9130907 |
agattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagcccttggttattctatgaatggagttgg |
9130808 |
T |
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| Q |
101 |
gatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtggttgctg |
200 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130807 |
gattcgggagaatgattgaagaggagtctagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtggttgctg |
9130708 |
T |
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| Q |
201 |
ctttctgtccgctgaattgttggtgctgttctgctgc |
237 |
Q |
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| T |
9130707 |
ctttctgtcggctgaattgttggtgctgttctgctgc |
9130671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 237
Target Start/End: Complemental strand, 9122798 - 9122575
Alignment:
| Q |
14 |
attgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatggagttgggatccgggagaat |
113 |
Q |
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| T |
9122798 |
attgtcgatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagcccttggttattctatgaatggagttgagatccgggagaat |
9122699 |
T |
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| Q |
114 |
gattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtggttgctgctttctgtccgct |
213 |
Q |
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| T |
9122698 |
gattgaagaggagtcgagctgcagcagatcagtggtccgtctggatgtcttttttctggttttgggggctgttggaagtggttgctgctttctgtcggct |
9122599 |
T |
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| Q |
214 |
gaattgttggtgctgttctgctgc |
237 |
Q |
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| T |
9122598 |
gaattgttggtgctgttctgctgc |
9122575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24524761 - 24524526
Alignment:
| Q |
1 |
agattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccctcggttattctatgaatggagttgg |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
24524761 |
agattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagcccttggttattctatgaatggagttgg |
24524662 |
T |
|
| Q |
101 |
gatccgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc-tggttttgggggctgttggaagtggttgct |
199 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24524661 |
gattcgggagaatgattgaagaggagtccagctgcagcagatcagtggtccgtctggatgtcttttttcttggttttgggggctgttggaagtggttgct |
24524562 |
T |
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| Q |
200 |
gctttctgtccgctgaattgttggtgctgttctgct |
235 |
Q |
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| T |
24524561 |
gctttctgtcggctgaattgttggtgctgttctgct |
24524526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 367 - 431
Target Start/End: Complemental strand, 24524519 - 24524455
Alignment:
| Q |
367 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcg |
431 |
Q |
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| T |
24524519 |
gctagtcctaggggatttgtttgtttctctatggtagccgtttggttttgagcaacgtgtgtgcg |
24524455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 10323126 - 10323079
Alignment:
| Q |
122 |
aggagtccagctgcagcagatcagtggtccgtctggatgtcttttttc |
169 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
10323126 |
aggagtccagctgaagcagataagtggtccgtctggatgtcatttttc |
10323079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 10323213 - 10323138
Alignment:
| Q |
1 |
agattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
76 |
Q |
| |
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||||||| |||||||||||||||| ||||| |||| || | | |||| |||||| ||| |||||||||||||||| |
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| T |
10323213 |
agattgtaaggatattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
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