View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_high_11 (Length: 347)
Name: NF8383_high_11
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 39669951 - 39670265
Alignment:
| Q |
1 |
gcagaacagacatgtcggagtcagcgggagcgtaggatgaggaacagcccgagtaacgaggaacacaacaaagaccaaaaccaagtagtggtagcctagt |
100 |
Q |
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| T |
39669951 |
gcagaacggacatgtcggagtcagcgggagcgtaggatgaggaacagcccgagtaacgaggaacacaacaaagaccaaaaccaagtagt--------agt |
39670042 |
T |
|
| Q |
101 |
aggagtattattattcatcataacactatcattcattcataagtatttacaacaacaccaacaactgtacaaaagacacagcatgcagcggcatttacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39670043 |
aggagtattattattcatcataacactatcattcattcataagtatttacaacaac------aactgtacaaaagacacagcatgcagcggcatttacta |
39670136 |
T |
|
| Q |
201 |
ctcttatttgagttgacgtggaccactcgaacaaatgaaacagaaaaatacagactcagtcaagacacatattatatacactcacttacccacctctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39670137 |
ctcttatttgagttgacgtggaccactcgaacaaatgaaacagaaaaatacagactcagtcaagacacatattatatacactcacttacccacctctctt |
39670236 |
T |
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| Q |
301 |
ctcttctattctatttctatgcttttact |
329 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
39670237 |
ctcttctattctatttctatgcttttact |
39670265 |
T |
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