View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8383_high_12 (Length: 336)
Name: NF8383_high_12
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 326
Target Start/End: Complemental strand, 3304267 - 3303955
Alignment:
| Q |
14 |
ccatctacataggcctttgcatgccacggacttattaccttaatcatattttgcaatatagtcatattttcaatgttgactacgaagtaaaacgtggact |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304267 |
ccatctacataggcctttgcatgccacggacttattaccttcatcatattttgcaatatagtcatattttcaatgttgactacgaagtaaaacgtggact |
3304168 |
T |
|
| Q |
114 |
taattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatactcaacttgaagatttcagaaaaagatcaaagttttctgatcaaatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304167 |
taattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatagtcaaattgaagatttcagaaaaagatcaaagttttctgatcaaatt |
3304068 |
T |
|
| Q |
214 |
ttgcataggatttgaaaataaaattctggtacagttgtcagagtcttatggcaatgagatatatcccaagctgcagaagtttgttatttgcatagtatct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304067 |
ttgcataggatttgaaaataaaattctggtacagttgtcagagtcttatggcaatgagatatatcccaagctgcagaagtttgttatttgcatagtatct |
3303968 |
T |
|
| Q |
314 |
tttgccacaggtt |
326 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
3303967 |
tttgcctcaggtt |
3303955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 3292318 - 3292207
Alignment:
| Q |
70 |
tatagtcatattttcaatgttgactacgaagtaaaacgtggacttaattgtttacaaaggatggtgagagatgtggaaaagataaataaaattgatactc |
169 |
Q |
| |
|
|||||||||| |||||| |||||||| ||| ||||| ||| ||| ||||| || |||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
3292318 |
tatagtcataatttcaaagttgactatgaa-taaaatgtgaactagattgtctaaaaaggatggtgagagatgtggaaaagataaataagattgatgatc |
3292220 |
T |
|
| Q |
170 |
aacttgaagattt |
182 |
Q |
| |
|
|| ||| |||||| |
|
|
| T |
3292219 |
aaattgtagattt |
3292207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University