View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8383_high_15 (Length: 310)

Name: NF8383_high_15
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8383_high_15
NF8383_high_15
[»] chr1 (3 HSPs)
chr1 (89-231)||(52906624-52906766)
chr1 (9-92)||(52907779-52907862)
chr1 (231-295)||(52906119-52906183)
[»] chr7 (1 HSPs)
chr7 (170-228)||(43721164-43721222)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 52906766 - 52906624
Alignment:
Q  89 ctaaacgtctaatcttactcaatactaatatacttaacctcccttctcaccgttacattaagcacaagtaagagaagttgagcatataaagaatactata 188  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  52906766 ctaaacgtctaatcttactcaatactaatatacctaacctcccttctcaccgttacattaagcccaagtaagagaagttgagcatataaagaatactcta 52906667  T
Q  189 ataaactggggtagaggaaaacctatgaacatcaatacaagta 231  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  52906666 ataaactggggtagaggaaaacctatgagcatcaatacaagta 52906624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 52907862 - 52907779
Alignment:
Q  9 aacacagactatttctccctataaaccatgacccataaaaccttaatccaaaaaacacttaccctcgagtcatcaaaactctaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  52907862 aacacagactatttctccctataaaccatgacccataaaaccttaatccaataaacacttaccctcgagtcatcaaaactctaa 52907779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 52906183 - 52906119
Alignment:
Q  231 aggtttgtataaagatgacagaatgcagtggatgtgagagtaattgactatataaatcaaattat 295  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52906183 aggtttgtataaagatgacagaatgcggtggatgtgagagtaattgactatataaatcaaattat 52906119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 228
Target Start/End: Complemental strand, 43721222 - 43721164
Alignment:
Q  170 gcatataaagaatactataataaactggggtagaggaaaacctatgaacatcaatacaa 228  Q
    |||||| ||||| ||| |||| |||||||||| ||||||||||  ||||||||||||||    
T  43721222 gcatatcaagaacactctaattaactggggtataggaaaaccttagaacatcaatacaa 43721164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University