View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_high_16 (Length: 302)
Name: NF8383_high_16
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 6058426 - 6058154
Alignment:
| Q |
18 |
acatgtcatataaatcataaattaatcaaaatcaacaataaattcctnnnnnnnnntagaatttgaacctgaatgatatcatgcaaagaaatgatattag |
117 |
Q |
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| T |
6058426 |
acatgtcatataaatcataaattaatcaaaatcaacattaaattcctaaaaaaaa-tagaatttgaacctgaatgatatcatgcaaagaaatgatattag |
6058328 |
T |
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| Q |
118 |
gatgattaattctcttaagaataaaaatctcagacataagactctcttgcaacttcttattcaatcttaacgtagcgatctctttaatagcaacttcagt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6058327 |
gatgattaattctcttaagaataaaaatctcagacataagactctcttgcaacttcttattcaatcttaacgtagcgatctctttaatagcaacttcagt |
6058228 |
T |
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| Q |
218 |
tccatgaactttgtgtctcgcatgccacacaactgaaaacgaacccgctccaatttgcttccctactacataat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6058227 |
tccatgaactttgtgtctcgcatgccacacaactgaaaacgaacccgctccaatttgcttcccaactacataat |
6058154 |
T |
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