View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8383_high_21 (Length: 237)

Name: NF8383_high_21
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8383_high_21
NF8383_high_21
[»] chr3 (2 HSPs)
chr3 (1-223)||(16723664-16723886)
chr3 (15-48)||(24741516-24741549)
[»] chr7 (5 HSPs)
chr7 (1-213)||(10695860-10696068)
chr7 (2-86)||(8638256-8638340)
chr7 (3-39)||(14626273-14626309)
chr7 (4-86)||(2702090-2702172)
chr7 (1-42)||(6241799-6241840)
[»] chr2 (3 HSPs)
chr2 (1-77)||(29849061-29849137)
chr2 (4-50)||(15641668-15641714)
chr2 (3-86)||(3278997-3279081)
[»] chr4 (1 HSPs)
chr4 (4-86)||(32205354-32205436)
[»] chr8 (1 HSPs)
chr8 (7-86)||(8234796-8234875)
[»] chr5 (1 HSPs)
chr5 (1-39)||(17703191-17703229)
[»] chr6 (1 HSPs)
chr6 (4-86)||(3180856-3180938)


Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 16723886 - 16723664
Alignment:
Q  1 gcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatggaaaaatctcaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16723886 gcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatggaaaaatctcaata 16723787  T
Q  101 atgtatttattttgacaggaaagatagaaacaagagaataggnnnnnnnnnnnntacctctatatcaagtgatggatacttcttcctcagtatccggacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||    
T  16723786 atgtatttattttgacaggaaagatagaaacaagagaatagggagagagagagatacctctatatcaagtgatggatacttcttcctcagtatccggacc 16723687  T
Q  201 tggtttgaaaaggagggaaaatc 223  Q
    |||||||||||||||||||||||    
T  16723686 tggtttgaaaaggagggaaaatc 16723664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 24741549 - 24741516
Alignment:
Q  15 aaaagtaccacgaaccggtacacaagtaccaatt 48  Q
    ||||||||||||||||||||||||||||| ||||    
T  24741549 aaaagtaccacgaaccggtacacaagtactaatt 24741516  T

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Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 10696068 - 10695860
Alignment:
Q  1 gcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatggaaaaatct--caa 98  Q
    |||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||   ||    
T  10696068 gcgaaccaattcgcaaaagtactacgaaccggtacataagtaccaattcgcagttcgcatcatgttaagagaattatgtgactatggaaaaatctaagaa 10695969  T
Q  99 taatgtatttattttgacaggaaagatagaaacaagagaat-aggnnnnnnnnnnnntacctctatatcaagtgatggatacttcttcctcagtatccgg 197  Q
      ||||||||||||||||||||| |||| || ||||| ||| |||            ||||||||| ||||||||||| ||||||||||| |||||||||    
T  10695968 atatgtatttattttgacaggaaggatacaaccaagacaatgagg-------agagatacctctatgtcaagtgatgggtacttcttccttagtatccgg 10695876  T
Q  198 acctggtttgaaaagg 213  Q
    ||||||||||||||||    
T  10695875 acctggtttgaaaagg 10695860  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 8638256 - 8638340
Alignment:
Q  2 cgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    |||||||||||||||||||||||| ||||  ||| |||||||||||| || |||  |  || || ||||||||||| ||||||||    
T  8638256 cgaaccaattcacaaaagtaccacaaacctatacgcaagtaccaatttgcggttcacaacaggtcaagagaattatatgactatg 8638340  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 14626273 - 14626309
Alignment:
Q  3 gaaccaattcacaaaagtaccacgaaccggtacacaa 39  Q
    ||||||||||||||||||||||||||| |||||||||    
T  14626273 gaaccaattcacaaaagtaccacgaactggtacacaa 14626309  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 2702090 - 2702172
Alignment:
Q  4 aaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    ||||||||  |||||||||||||||||  |||||| |||||||||||  ||| ||  |||||||| | |||||| ||||||||    
T  2702090 aaccaatttgcaaaagtaccacgaaccactacacacgtaccaattcgtggttcgcaacatgttaatataattatatgactatg 2702172  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6241840 - 6241799
Alignment:
Q  1 gcgaaccaattcacaaaagtaccacgaaccggtacacaagta 42  Q
    ||||| |||||||||||||||||| ||||||||| |||||||    
T  6241840 gcgaatcaattcacaaaagtaccatgaaccggtagacaagta 6241799  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29849061 - 29849137
Alignment:
Q  1 gcgaaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattat 77  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||  ||||| |||||||||||    
T  29849061 gcgaaccaattcgcaaaagtaccacgaactggtacgcaagtaccaattcgcagttcgcaacatgtcaagagaattat 29849137  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 15641714 - 15641668
Alignment:
Q  4 aaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcg 50  Q
    ||||||||  |||||||||||||| ||||||| ||||||||||||||    
T  15641714 aaccaatttgcaaaagtaccacgagccggtacccaagtaccaattcg 15641668  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 3278997 - 3279081
Alignment:
Q  3 gaaccaattcacaaaagtaccacgaaccggtacac-aagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    ||||||||||  ||||||||||||||| |||  |  ||||||||||||  |||| |||||||||||||| |||| || |||||||    
T  3278997 gaaccaattcgtaaaagtaccacgaactggttaagtaagtaccaattcatagttcgcttcatgttaagaaaattgtgcgactatg 3279081  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 32205354 - 32205436
Alignment:
Q  4 aaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||  ||  |   |||||||||||||||||||||||||    
T  32205354 aaccaattcacaaaagtacctcaaagcggtacacaagtaccaattcgcgattcacaatatgttaagagaattatgtgactatg 32205436  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 8234875 - 8234796
Alignment:
Q  7 caattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||||||| ||  || |  ||||||||||| ||||||||    
T  8234875 caattcacaaatgtaccacgaaccagtacataagtaccaattcgcagttcgcaacacgccaagagaattatctgactatg 8234796  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 17703229 - 17703191
Alignment:
Q  1 gcgaaccaattcacaaaagtaccacgaaccggtacacaa 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17703229 gcgaaccaattcacaaaagtaccacgaaccggtacacaa 17703191  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 3180856 - 3180938
Alignment:
Q  4 aaccaattcacaaaagtaccacgaaccggtacacaagtaccaattcgcagtttgcttcatgttaagagaattatgtgactatg 86  Q
    ||||||||| |||| ||||||| | | ||||||||||||||||||| ||||||||   |||| |||| |||||||| ||||||    
T  3180856 aaccaattcgcaaaggtaccacaagctggtacacaagtaccaattcacagtttgcagtatgtcaagataattatgtcactatg 3180938  T

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