View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8383_high_22 (Length: 227)
Name: NF8383_high_22
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_high_22 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43665687 - 43665909
Alignment:
| Q |
1 |
aaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatctggaagatgactca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665687 |
aaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatctggaagatgactca |
43665786 |
T |
|
| Q |
101 |
gtctaaactagaactacttaaaagacattctacaaactctaaaggaaagtgctaatttcagcttcaaagaagaaagcagtgctgattaaattaattagct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43665787 |
gtctaaactagaactacttaaaagacattctacaaactctaaagtaaagtgctaatttcagcttcaaagaagaaagcagtgctgatta----aattagct |
43665882 |
T |
|
| Q |
201 |
aacctccctataattacgcaccaaacc |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43665883 |
aacctccctataattacgcaccaaacc |
43665909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University