View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_high_25 (Length: 208)
Name: NF8383_high_25
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_high_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 3784259 - 3784052
Alignment:
| Q |
1 |
ttttttcccactttaaggccaagttgttttgtacggatgctgcagaagatcatacaagtttctttgatttatttacacgctacaaacaaagctgatcaac |
100 |
Q |
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| T |
3784259 |
ttttttcccactttaaggtcaagttgttttgtacggatactgcagaagatcatacaagtttctttgatttatttacacgctacaaacaaatctgatcaac |
3784160 |
T |
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| Q |
101 |
ttgttgttggaagattttgctgaaattagtcatttgaatctcctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaa |
200 |
Q |
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| T |
3784159 |
ttgttgttggaagattttgctgaaattagtcatttgaatctcctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaa |
3784060 |
T |
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| Q |
201 |
atagaaat |
208 |
Q |
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|||||||| |
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| T |
3784059 |
atagaaat |
3784052 |
T |
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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 121 - 202
Target Start/End: Complemental strand, 37915988 - 37915907
Alignment:
| Q |
121 |
tgaaattagtcatttgaatctcctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaaat |
202 |
Q |
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| T |
37915988 |
tgaaattagtcatttgagacctctcaagagccaaaccaacctcaattccacctcgaccatctctacaatcagaaagagaaat |
37915907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 37954420 - 37954479
Alignment:
| Q |
143 |
ctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaaat |
202 |
Q |
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| T |
37954420 |
ctcaagagtcaaaccaaccttaattccacctccaccacctctacaatcagaaagagaaat |
37954479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 37960229 - 37960288
Alignment:
| Q |
143 |
ctcaagagccaaaccaacctgaattccacctccaccatctctacaatcagaaagagaaat |
202 |
Q |
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|||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||| |
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| T |
37960229 |
ctcaagagccaaaccaacttcaattccacctccgccgtctctacaatcagaaagagaaat |
37960288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 37907782 - 37907754
Alignment:
| Q |
174 |
ccaccatctctacaatcagaaagagaaat |
202 |
Q |
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| T |
37907782 |
ccaccatctctacaatcagaaagagaaat |
37907754 |
T |
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