View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_10 (Length: 388)
Name: NF8383_low_10
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 52180698 - 52180311
Alignment:
| Q |
1 |
ctcaaatgatattattgaaaattcttctaattgtcaaatttctctggctttgacttagcatattgttaattatcatgtgctgaagtacccttagcagagt |
100 |
Q |
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| T |
52180698 |
ctcaaatgatattattgaaaattcttctaattgtcaaatttctctggctttgacttagcatattgttaattatcatgtgctgaagtacccttagcagagt |
52180599 |
T |
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| Q |
101 |
catcctctcttttggaagaagcatccttcctttgacagttcgtatcaacatacgacttcaagaaatgccaaagaattaaaacatttaaaaaagaattaaa |
200 |
Q |
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| T |
52180598 |
catcctctcttttggaagaagcatccttcctttgacagttcgtatcaacatacgacttcaagaaatgccaaagaattaaaacatttaaaaaagaattaaa |
52180499 |
T |
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| Q |
201 |
aacccatgctccaattccattacatcctcctctagaataatgcaacaaaagtactccaacatggcacgccaaattgcaaccaaacaacaccatatgaaaa |
300 |
Q |
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| T |
52180498 |
aacccatgctccaattccattacatcctcctctagaataatgcaacaaaagtactccaacatggcacgccaaattgcaaccaaacaacaccatatgaaaa |
52180399 |
T |
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| Q |
301 |
ttccctgaaaatttaaatgttttactaggtaacccaatttgtgtccaaaatcggtacccatacaccactgaacaaaccaacgtagaga |
388 |
Q |
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| T |
52180398 |
ttccctgaaaatttaaatgttttactaggtaacccaatttgtgtccaaaatcggtacccataaaccactgaacaaaccaacgtagaga |
52180311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 7297245 - 7297125
Alignment:
| Q |
182 |
catttaaaaaagaattaaaaacccatgctccaattccattacatcctcctctagaataatgcaacaaaagtactccaacatggcacgccaaattgcaacc |
281 |
Q |
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|||| |||| |||||| |||||||| || |||||||||||||| || |||||| | |||| |||||||| || |||||||| || | | ||||| || |
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| T |
7297245 |
cattcaaaatagaattgaaaacccaagcaccaattccattacacccacctctaaataaatgtaacaaaagaacaccaacatgacaaacaaggttgcatcc |
7297146 |
T |
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| Q |
282 |
aaacaacaccatatgaaaatt |
302 |
Q |
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| T |
7297145 |
caacaacaccatctgaaaatt |
7297125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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