View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_11 (Length: 384)
Name: NF8383_low_11
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 43437765 - 43438114
Alignment:
| Q |
13 |
gagatgaacattcaccaaaggatggaattgaaacagagaaattgttggaagaaatgtctaagtgacggagattgttgtaaccggagaagtcgatttctcc |
112 |
Q |
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| T |
43437765 |
gagatgaacattcaccaaaggatggaattgaaacagagaaattgttggaagatatgtctaagtgacggagattgttgtagccggagaagtcgatttcacc |
43437864 |
T |
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| Q |
113 |
ggtgattttgttacctctgagagataaaagctctaaatcatggttgaggatccagtggaagaaatttggaccgttgattttgttttcggagaggtcgaga |
212 |
Q |
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| T |
43437865 |
ggtgattttgttacctctgagagataaaagctctaaatcatggttgaggatccagtggaagaaatttggaccgttgattttgttttcagagaggtcgaga |
43437964 |
T |
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| Q |
213 |
gatttaagagatgaagcgagaccccatttaggagaatcgaattggaggtcgttgttggagaggttgagggacttaaggcttaagcatgtggagaggaagg |
312 |
Q |
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| T |
43437965 |
gatttaagagatgaagcaagaccccatttaggagaatcgaattggaggtcgttgttggagaggttgagggacttgaggcttaagcatgtggagaggaagg |
43438064 |
T |
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| Q |
313 |
agaggtctgagaaagatgaagagagtgtgtttagtgatagatctagtgtg |
362 |
Q |
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| T |
43438065 |
agaggtctgagaaagatgaagagagtgtgtttagtgatagatctagtgtg |
43438114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 8562542 - 8562595
Alignment:
| Q |
114 |
gtgattttgttacctctgagagataaaagctctaaatcatggttgaggatccag |
167 |
Q |
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| T |
8562542 |
gtgattttgtttcctatgacagataaaaactctatatcatggttgaggatccag |
8562595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 5850697 - 5850651
Alignment:
| Q |
114 |
gtgattttgttacctctgagagataaaagctctaaatcatggttgag |
160 |
Q |
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| T |
5850697 |
gtgattttgtttcctatgacagataaaagctctagatcatggttgag |
5850651 |
T |
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