View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_12 (Length: 372)
Name: NF8383_low_12
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 368
Target Start/End: Complemental strand, 32488121 - 32487775
Alignment:
| Q |
20 |
tcccagccaagcagctccactccattatggttgaatgtcttgtgagttagatcttactatttgagaaatgttagggttcatgtatcatataatgtgcaat |
119 |
Q |
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| T |
32488121 |
tcccagccaagcagctccactccattatggttgactgtcttgtgagttagatcttactatttgagaaatgttatggttcatgtatcatataatgtgcaat |
32488022 |
T |
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| Q |
120 |
atatatctaggtcagttcatgccaactactataaattgtcactatcaagnnnnnnnnngttggtgttaatgtgcctcagtcaatagatccaacattggtt |
219 |
Q |
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| T |
32488021 |
atatatctaagtcagttcatgccaactactataaattgtcactatcaagtttttttttg--ggtgttaatgtgcctcagtcaatagatccaacattggtt |
32487924 |
T |
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| Q |
220 |
actgcattttcctaaacagttctttaatttcttgttcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487923 |
actgcattttcctaaacagttctttaatttcttgttcatattttgatgtcttagtacactacagagtattatttcttgttcatattgtgacataatcatc |
32487824 |
T |
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| Q |
320 |
atgttatgaaaaattgcagcctaattaagatcttccatctctgcttctc |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32487823 |
atgttatgaaaaattgcagcctaattaagatcttccatctctgcttctc |
32487775 |
T |
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