View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_13 (Length: 353)
Name: NF8383_low_13
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 20687120 - 20687468
Alignment:
| Q |
1 |
acagttcccttttgaggatgttttgtttctgtataaagatcttgaataatttcttcccgatgaatctggtcagaagccatccccctgtactttgtgacgc |
100 |
Q |
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| T |
20687120 |
acagttcccttttgaggatgttttgtttctgtataaagatcttgaataatttcttcccgatgaatctgggaagaaaccatccccctgtactttgtgacgc |
20687219 |
T |
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| Q |
101 |
aaggccaatccatggatgccaccacctttataattcaacacgcagagtacaaatatataaatatgatttcatnnnnnnnctgcaaatacgtacgcaaaaa |
200 |
Q |
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| T |
20687220 |
aaggccaatccatggatgccaccacctttataattcaacacgcagagtacaaatatataaatatgatttcataaaaaaactgcaaataagtacgcaaaaa |
20687319 |
T |
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| Q |
201 |
gac--agcttactgcagctatagaaggacttgagtcttctcctggatgagggtgtgttacatccgctccaaatattatagttggtttatcagttactagg |
298 |
Q |
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| T |
20687320 |
gacaaagcttactgcagctatagaaggacttgagtcttctcctggatgagggtgtgttacatccgctccaaatattatagttggtttatcagttactagg |
20687419 |
T |
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| Q |
299 |
ggaatattatatataactgcatcattcagcacggtgttacgaccaccaa |
347 |
Q |
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| T |
20687420 |
ggaatattatatataactgcatcattcagcacggtgttacgaccaccaa |
20687468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 293
Target Start/End: Original strand, 20662875 - 20663137
Alignment:
| Q |
37 |
agatcttgaataatttcttcccgatgaatctggtcagaagccatccccctgtactttgtgacgcaaggccaatccatggatgccaccacctttataattc |
136 |
Q |
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| T |
20662875 |
agatcttgaataatttcttcccgatgagactgggcagaaataagtcccctatagtttgtgacttgaggccaatccatggatgccaccacctatatcattc |
20662974 |
T |
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| Q |
137 |
aacacgcagagtacaaa--tatataaatatgattt--catnnnnnnnctgcaaatacgtacgcaaaaagaca--gcttactgcagctatagaaggacttg |
230 |
Q |
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| T |
20662975 |
aacaagcaaaaaataaaactatataaatataatatatcataaaaaagttgcacataactatgcaaaaaggcaaagcttactgcagctattgaaggagacg |
20663074 |
T |
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| Q |
231 |
agtcttctcctggatgagggtgtgttacatccgctccaaatattatagttggtttatcagtta |
293 |
Q |
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| T |
20663075 |
aatcttctcctggctgaggatgtgttacatccgcaccaaatattatcgttggtacatcagtta |
20663137 |
T |
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