View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_14 (Length: 352)
Name: NF8383_low_14
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 14881873 - 14881546
Alignment:
| Q |
19 |
cttcaaacatcggtgaaatgagtagcttggaaaagctggatatctcttataataactttcaaggtgcattgaataagcgattctcccgctggccatacga |
118 |
Q |
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| T |
14881873 |
cttcaaacatcggtgaaatgattagcttggaaaagctggatatctcttataataactttcaaggtgcattgaataagcgattctcccgctggccttacga |
14881774 |
T |
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| Q |
119 |
ggcatttgtaggaaaccttcatctttgtggagcctctcttggtagctgtggtgcttcccgtaataggctatcgaggttaagtgagaaatcagtgattata |
218 |
Q |
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| T |
14881773 |
ggcatttgtaggtaaccttcatctttgtggagcctctcttggtagctgtggtgcttcccgtaataggctatcgaggttaagtgagaaatcagtgattata |
14881674 |
T |
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| Q |
219 |
atctctgccttgtcaactctagctgcaattgcactacttgttcttgcagtgaaaatcttcttgagaaataggcaagaacttctgaagaaaggcagtgaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14881673 |
atctctgccttgtcaactctagctgcaattgcactacttgttcttgcagtgaaaatcttcttgagaaataggcaagaacttctgaagaaaggcagtgaat |
14881574 |
T |
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| Q |
319 |
tagagtgtgttttctcctcctcttcatc |
346 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
14881573 |
tagagtgtgttttctcctcctcttcatc |
14881546 |
T |
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