View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_24 (Length: 250)
Name: NF8383_low_24
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_24 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 16723977 - 16724217
Alignment:
| Q |
1 |
taggagataaatgagaaagaaaaatatctggtgtagcagataaattttctagaaaacattctttgaagcttggagaaagagaacgtcttctgcaaagtaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16723977 |
taggagataaatgagaaagaaaaatatctggtgtagcagataaattttctagaaaacattctttgaagcttggagaaagagaacgtcttctgcaaagtaa |
16724076 |
T |
|
| Q |
101 |
cactagtttgttgcagcgggctactataatttatacttttttgcaatattaagatagtttactatacttaatttggtagtacgtaatactgcgaaccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724077 |
cactagtttgttgcagcgggctactataatttatacttttttgcaatattaagatagtttactatacttaatttggtagtacgtaatactgcgaaccaat |
16724176 |
T |
|
| Q |
201 |
gtgtaccaaaccccatacatccatacataccaaattcttct |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
16724177 |
gtgtaccaaaccccatacatccatacataccaaattcttct |
16724217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 32964699 - 32964523
Alignment:
| Q |
16 |
aaagaaaaatatctggtgtagcagataaattttctagaaaacattctttgaagcttggagaaagagaacgtcttctgcaaagta----------acacta |
105 |
Q |
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||||||||| || ||||||| || |||||||||||||||||| | ||||||| |||| |||||||||||||||| ||||| | |||||| |
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| T |
32964699 |
aaagaaaaacatgtggtgtatcaaataaattttctagaaaacct-ctttgaaacttg-agaaagagaacgtctttcgcaaattttgaaaagtggacacta |
32964602 |
T |
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| Q |
106 |
gtttgttgcagcgggctactataatt--tatacttttttgcaatattaagatagtttactatacttaatttggtagtac |
182 |
Q |
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||||||||||||||||||||||| || | ||||||||| |||||||||||||| || | |||||||||| |||||||| |
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| T |
32964601 |
gtttgttgcagcgggctactatacttcttctacttttttacaatattaagatagcttgcaatacttaattaggtagtac |
32964523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 10850789 - 10850681
Alignment:
| Q |
100 |
acactagtttgttgcagcgggctactataat--ttatacttttttgcaatattaagatagtttactatacttaatttggtagtacgtaatactgcgaacc |
197 |
Q |
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||||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||| |||| ||| || |||| |||||| |
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| T |
10850789 |
acactagtttgctgcagttcgctactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattac-tagtactacgaacc |
10850691 |
T |
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| Q |
198 |
aatgtgtacc |
207 |
Q |
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||| ||||| |
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| T |
10850690 |
gatgcgtacc |
10850681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 207
Target Start/End: Complemental strand, 10878303 - 10878195
Alignment:
| Q |
100 |
acactagtttgttgcagcgggctactataat--ttatacttttttgcaatattaagatagtttactatacttaatttggtagtacgtaatactgcgaacc |
197 |
Q |
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||||||||||| ||||| ||||||||||| || ||| |||||||||||||||||||| ||||||||||||||| |||| ||| || |||| |||||| |
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| T |
10878303 |
acactagtttgctgcagttcgctactataatccttctacctttttgcaatattaagatagcttactatacttaattaggtattac-tagtactacgaacc |
10878205 |
T |
|
| Q |
198 |
aatgtgtacc |
207 |
Q |
| |
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||| ||||| |
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| T |
10878204 |
gatgcgtacc |
10878195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 3278717 - 3278679
Alignment:
| Q |
144 |
caatattaagatagtttactatacttaatttggtagtac |
182 |
Q |
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|||||||||||||| ||||||||||||||| |||||||| |
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| T |
3278717 |
caatattaagatagcttactatacttaattaggtagtac |
3278679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 36236170 - 36236218
Alignment:
| Q |
134 |
tacttttttgcaatattaagatagtttactatacttaatttggtagtac |
182 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
36236170 |
tacttttttgcaatattaagatatattactatacttaattaggtagtac |
36236218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 41486374 - 41486319
Alignment:
| Q |
120 |
gctactataat--ttatacttttttgcaatattaagatagtttactatacttaatt |
173 |
Q |
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||||||||||| || ||||| |||||||||||||||||| ||| ||||||||||| |
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| T |
41486374 |
gctactataatccttctacttgtttgcaatattaagatagcttattatacttaatt |
41486319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 261 - 299
Alignment:
| Q |
134 |
tacttttttgcaatattaagatagtttactatacttaat |
172 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| |
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| T |
261 |
tacttttttgcaatattaagatagcctactatacttaat |
299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 6242081 - 6242118
Alignment:
| Q |
134 |
tacttttttgcaatattaagatagtttactatacttaa |
171 |
Q |
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|||||||||||||||||||| |||| |||||||||||| |
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| T |
6242081 |
tacttttttgcaatattaagttagtctactatacttaa |
6242118 |
T |
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