View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_25 (Length: 241)
Name: NF8383_low_25
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 8414626 - 8414418
Alignment:
| Q |
22 |
aaaaccttctttttagttatttccttttca-attctccataggagatagagtcatgacggatatgatcgtggttacaacaaaatctatattgaatatgag |
120 |
Q |
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| T |
8414626 |
aaaaccttctttttagttatttccttttcagattctccataggagatagagtcatgacggatatgatcgtggttacaacaacaactatattgaatatgag |
8414527 |
T |
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| Q |
121 |
tatcaattatatcaatagtacaatcaacatcctcccgtggaagaaagaccgtatagtatataaaatgttttgaattagttcacacaatagtccatgataa |
220 |
Q |
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| T |
8414526 |
tatcaattatatcaattgtactatcaacatcctcccgaggaagaaagaccgtatagtatataaaatgttttgaattagttcacacaatagtccatgataa |
8414427 |
T |
|
| Q |
221 |
acacgaaac |
229 |
Q |
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||| ||||| |
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| T |
8414426 |
acatgaaac |
8414418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 8437008 - 8436809
Alignment:
| Q |
22 |
aaaaccttctttttagttatttccttttca-attctccataggagatagagtcatgacggatatgatcgtggttacaacaaaatctatattgaatatgag |
120 |
Q |
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|||| |||||| |||||||||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||||| |||| | | ||| |||| |
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| T |
8437008 |
aaaatcttcttgttagttatttccttttcagattctccatatgagatagagccatgac-----tgatcgtggttacaacaacttctaaactcaatttgag |
8436914 |
T |
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| Q |
121 |
tatcaattatatcaatagtacaatcaacatcctcccgtggaagaaagaccgtatagtatataaaatgttttgaattagttcacacaa---tagtccatga |
217 |
Q |
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| T |
8436913 |
tatcaattata-caacaatacaatcaacatcctcccgaggaagaaagaccgtaaaaaatataagatgttttgaattaattcatgcaatattagtccatga |
8436815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 31850437 - 31850486
Alignment:
| Q |
84 |
tgatcgtggttacaacaaaatctatattgaatatgagtatcaattatatc |
133 |
Q |
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||||| |||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
31850437 |
tgatcatggttacaacaacttctatactcaatatgagtatcaattatatc |
31850486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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