View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8383_low_26 (Length: 241)
Name: NF8383_low_26
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_26 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 15026289 - 15026513
Alignment:
| Q |
1 |
aaataactaaaatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15026289 |
aaataactaaaatgtaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgt |
15026388 |
T |
|
| Q |
101 |
gacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgttcttcactggtggctttctcaccccctgccttgtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15026389 |
gacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagaatttgtgttcttcactggtggctttctcaccccgtgccttgtc |
15026488 |
T |
|
| Q |
201 |
ggaagatccactcctttgagttttg |
225 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
15026489 |
ggaaggtccactcctttgagttttg |
15026513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 21365698 - 21365912
Alignment:
| Q |
11 |
aatgcaggcacaatacttgaaaaacgatccagattacatgagctgcaaaaagaaagaatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgt |
110 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||| | ||||| ||||||| |||||||||||| |
|
|
| T |
21365698 |
aatgtaggcacagtacttgaaaaacgatccagattacctaagttgcaaaaagaaagaatgcaagaaagagcttaatggaaaatgcattgtgacaacttgc |
21365797 |
T |
|
| Q |
111 |
agtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgttcttcactggtggctttctcaccccctgccttgttggaagatcca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||| |
|
|
| T |
21365798 |
agtggttcaataaagtttcatgttatcaacataagaagtgacatagagtttgtgttctttactggtggctttctcaccccttgccttattggaaggtcca |
21365897 |
T |
|
| Q |
211 |
ctcctttgagttttg |
225 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
21365898 |
ctcctttgggttttg |
21365912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 218
Target Start/End: Original strand, 26695899 - 26696050
Alignment:
| Q |
67 |
aatgcaagaaagaacagaatgggaaatgcagtgtgacaacttgtagtggttcaataaagtttcatgttatcaacattagaagtgatatagagtttgtgtt |
166 |
Q |
| |
|
||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |
|
|
| T |
26695899 |
aatgcaagaaagagcttaatgggaaatgcattgtgacaacttgtagtggttcaataaagtttcatgttacaaacataagaagtgacatagaatttgtgtt |
26695998 |
T |
|
| Q |
167 |
cttcactggtggctttctcaccccctgccttgttggaagatccactcctttg |
218 |
Q |
| |
|
||| |||||||| ||||||| |||||||||| ||||||| |||||||||||| |
|
|
| T |
26695999 |
ctttactggtgggtttctcagcccctgcctttttggaaggtccactcctttg |
26696050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University