View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_30 (Length: 226)
Name: NF8383_low_30
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 36398768 - 36398960
Alignment:
| Q |
16 |
acatcaaattggcttttaannnnnnngaagagagctgtagtaagagttgtttttcctatcccgcccataccccatatccctatgaaatgaacatcctcca |
115 |
Q |
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| T |
36398768 |
acatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttcctatcccgcccataccccatatccctatgaaatgaacatcctcca |
36398867 |
T |
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| Q |
116 |
gtcctagcttcagagttgaatatagttcttccagtcttacatcaattgcaaccagaccatcattataggatgggaacttgagttctagtcttt |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36398868 |
gtcctagcttcagagttgaatatagttcttccaatcttacatcaattgcaaccagaccatcattataggatgggaacttgagttctagtcttt |
36398960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 36407550 - 36407742
Alignment:
| Q |
16 |
acatcaaattggcttttaannnnnnngaagagagctgtagtaagagttgtttttcctatcccgcccataccccatatccctatgaaatgaacatcctcca |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407550 |
acatcaaattggcttttaatttttttgaagagagctgtagtaagagttgtttttcctatcccgcccataccccatatccctatgaaatgaacatcctcca |
36407649 |
T |
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| Q |
116 |
gtcctagcttcagagttgaatatagttcttccagtcttacatcaattgcaaccagaccatcattataggatgggaacttgagttctagtcttt |
208 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36407650 |
gtcctagcttcagagttgaatatagttcttccaatcttacatcaattgcaaccagaccatcattataggatgggaacttgagttctagtcttt |
36407742 |
T |
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