View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_5 (Length: 418)
Name: NF8383_low_5
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Original strand, 11604454 - 11604846
Alignment:
| Q |
12 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604454 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
11604553 |
T |
|
| Q |
112 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaatccttaccca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604554 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaatccttaccca |
11604653 |
T |
|
| Q |
212 |
atccagcacaagaatacaaagctatatctctcttgcgcgtcgtaagcatcactctacttccacggttgttattaggaaaagcatgattgaggccatccca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11604654 |
atccagcacaagaatacaaagctatatctctcttgcgcgtcgtaagcatcactctacttccacggttgttattaggaaaagcatgattgaggccatccca |
11604753 |
T |
|
| Q |
312 |
tactttcacatgccacacatcatcaagcactattagatacttctgacttctctgaagaaaattctggataaactttttcagatcgtcattatt |
404 |
Q |
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| T |
11604754 |
tactttcacatgccacacatcatcaagcactattagatacttctgacttctctgaagaaaattctggataaactttttcagatcgtcattatt |
11604846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 347
Target Start/End: Complemental strand, 11641501 - 11641160
Alignment:
| Q |
12 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
111 |
Q |
| |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
11641501 |
ttctatgtttgatcttccttttgtagccaaagcaccactgattgccacaattgctaatggtaaccctccacacaatttcaagatattcctacaaacttct |
11641402 |
T |
|
| Q |
112 |
tcaagatgaggaggacatgaattat------cttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaatcct |
205 |
Q |
| |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
11641401 |
tcaagatgaggaggacatgagttattattaccttgaaatgtcttcctacaaaaaagagaccaagcttcttgctcaggtaagaattcaaggtgaaaatcct |
11641302 |
T |
|
| Q |
206 |
tacccaatccagcacaagaatacaaagctatatctctcttgcgcgtcgtaagcatcactctacttccacggttgttattaggaaaagcatgattgaggcc |
305 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| | || | | |
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| T |
11641301 |
tacctaattcagcacaagaatacaaagctatatctttcttgcgcgtcgtaagcatcactctacttccacggtcattattaggcaaagcaagctttacagc |
11641202 |
T |
|
| Q |
306 |
atcccatactttcacatgccacacatcatcaagcactattag |
347 |
Q |
| |
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||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
11641201 |
atcccatacattcacatgccacacatcatcaagcacaattag |
11641160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 11622995 - 11622615
Alignment:
| Q |
12 |
ttctatgtttgatctttcttttgtcgccaaagcaccactgattgccacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
111 |
Q |
| |
|
||||||||||| |||| || |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11622995 |
ttctatgtttgttcttcctcttgtagccaaagcaccacttattgctacaattgctagtggcaaccctccacacaatttcaagatattcctacaaacttct |
11622896 |
T |
|
| Q |
112 |
tcaagatgaggaggacatgaattatcttgaaatgtcttcctacaaaaaagagaccaagcttctttctcaggtaagaattcaagatgaaaatccttaccca |
211 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||||| | |
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| T |
11622895 |
tcaagatgaggaggacatgaattaccttgaaatgtcttcctacaaaaaagagaccaagcttcttgctcaggtaagaatgcaaggtgaaagtccttaccta |
11622796 |
T |
|
| Q |
212 |
atccagcacaagaatacaaagctatatctctcttgcgcgtcgtaagcatcactctacttccacggttgttattaggaaaagcatgattgaggccatccca |
311 |
Q |
| |
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|| |||||| ||| |||||||| ||||||| || ||||||||||||||||||||||||||||||||||| || | ||| || | | ||||| |
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| T |
11622795 |
attcagcac--gaa-------ctatatctttcttgcgtgtggtaagcatcactctacttccacggttgttattaggcaaggaatgcttcacatcgtccca |
11622705 |
T |
|
| Q |
312 |
tactttcacatgccacacatcatcaagcactattagatacttctgacttctctgaagaaaattctggataaactttttcagatcgtcattatt |
404 |
Q |
| |
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||||||||||| ||| ||||||||||| || ||||||||| ||| ||||||||||| ||||||| || |||| |||||||||||||||||| |
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| T |
11622704 |
tactttcacattccatacatcatcaagaacaattagatac--ctg-cttctctgaagcaaattctttatcaactctttcagatcgtcattatt |
11622615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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