View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8383_low_8 (Length: 404)

Name: NF8383_low_8
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8383_low_8
NF8383_low_8
[»] chr7 (3 HSPs)
chr7 (16-392)||(39844873-39845248)
chr7 (111-380)||(22196949-22197217)
chr7 (111-380)||(22240604-22240872)
[»] chr3 (4 HSPs)
chr3 (14-392)||(1547597-1547974)
chr3 (109-374)||(52612790-52613054)
chr3 (109-380)||(42773724-42773994)
chr3 (218-374)||(31524698-31524853)
[»] chr8 (3 HSPs)
chr8 (32-250)||(27220356-27220574)
chr8 (66-247)||(32699516-32699697)
chr8 (129-383)||(5201145-5201398)
[»] chr5 (6 HSPs)
chr5 (163-377)||(1160453-1160666)
chr5 (29-394)||(2688189-2688551)
chr5 (30-139)||(36517534-36517643)
chr5 (28-152)||(11239351-11239475)
chr5 (222-371)||(10430270-10430418)
chr5 (261-301)||(9850737-9850777)
[»] chr6 (3 HSPs)
chr6 (111-380)||(20794294-20794561)
chr6 (129-380)||(14459318-14459568)
chr6 (69-327)||(2030796-2031052)
[»] chr2 (3 HSPs)
chr2 (213-374)||(38784786-38784946)
chr2 (162-330)||(4636777-4636944)
chr2 (292-383)||(36251064-36251155)
[»] chr4 (3 HSPs)
chr4 (113-250)||(55854883-55855020)
chr4 (31-247)||(7114944-7115160)
chr4 (56-152)||(38092895-38092991)
[»] chr1 (2 HSPs)
chr1 (165-208)||(52867174-52867217)
chr1 (163-241)||(21977363-21977441)
[»] scaffold0044 (1 HSPs)
scaffold0044 (56-152)||(43156-43252)


Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 392
Target Start/End: Complemental strand, 39845248 - 39844873
Alignment:
Q  16 ggacatccaaatcttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctcca 115  Q
    ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39845248 ggacaaccaaaccttacctcaacaaacaatctcgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctcca 39845149  T
Q  116 agacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacc 215  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  39845148 agacatcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgccttccaaatcacccaaattaccacc 39845049  T
Q  216 tcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattc 315  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39845048 tcccatatcatacgcaatcccttccgaattttcttattaatagatccccc-actccaacattcccaatgaataattaaattcggtggcattacaaaattc 39844950  T
Q  316 aaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  39844949 aaatctaaccacaacatcacattcaaccaaacattcctagccatgttacaatgaaggaagagatgcgatgaggtctc 39844873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 380
Target Start/End: Complemental strand, 22197217 - 22196949
Alignment:
Q  111 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 210  Q
    ||||| |||| |||||||||||||||||| | | ||||||| || ||| |  ||||||||||||| ||||||||||| ||  ||||||||||||||||      
T  22197217 ctccacgacaacacttttacctcctccactagcacatcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcc 22197118  T
Q  211 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 310  Q
    |  ||||||| ||||| || || || ||||||| ||||||  ||| ||  ||||| ||||||||| | |||||| ||||  |  ||||| | ||||| ||    
T  22197117 cggcctcccaaatcattcgtaacccgttccgaactttcttaataaaaggaccccc-actccaacacttccaatggataaaaaggttcggaggcattataa 22197019  T
Q  311 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 380  Q
    |||||||||| || ||  |||||| | |||||||||||||||  ||||  |||||||||||||| |||||    
T  22197018 aattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatg 22196949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 111 - 380
Target Start/End: Original strand, 22240604 - 22240872
Alignment:
Q  111 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 210  Q
    ||||| |||| |||||||||||||||||| | | ||||||| || ||| |  ||||||||||||| ||||||||||| ||  ||||||||||||||||      
T  22240604 ctccacgacaacacttttacctcctccactagcacatcccatctagcaataacattattaaaaattcggtcatttctagccttccaaatcacccaaatcc 22240703  T
Q  211 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 310  Q
    |  ||||||| ||||| || || || ||||||| ||||||  ||| ||  ||||| ||||||||| | |||||| ||||  |  ||||| | ||||| ||    
T  22240704 cggcctcccaaatcattcgtaacccgttccgaactttcttaataaaaggaccccc-actccaacacttccaatggataaaaaggttcggaggcattataa 22240802  T
Q  311 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 380  Q
    |||||||||| || ||  |||||| | |||||||||||||||  ||||  |||||||||||||| |||||    
T  22240803 aattcaaatccaaacaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaaaagatg 22240872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 1547974 - 1547597
Alignment:
Q  14 atggacatccaaatcttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctc 113  Q
    ||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1547974 atggacaaccaaaccttacctcaacaaacaatcttgggggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctt 1547875  T
Q  114 caagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattacca 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  1547874 caagacatcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggccatttctcgccttccaaatcacccaaattacca 1547775  T
Q  214 cctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaat 313  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  1547774 cctcccatatcatacgcaatcccttccaaattttcttgttaatagatccccc-actccaacattcccaatgaataattaaattcggtggcattacaaaat 1547676  T
Q  314 tcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1547675 tcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctc 1547597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 109 - 374
Target Start/End: Original strand, 52612790 - 52613054
Alignment:
Q  109 acctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaat 208  Q
    ||||||| |||| |||||| |||| |||||| | |||||||||    ||||| |||||||| ||||| || ||||| |||||| |||| |  ||||||||    
T  52612790 acctccatgacaacactttcaccttctccacaagctcatcccatggagcattctcattattgaaaatacgatcattcctcgctttccacaaaacccaaat 52612889  T
Q  209 taccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattac 308  Q
     ||||||||||| ||||| | ||||||||||||||| ||||| |  ||  |||||||| |||||||| ||||||||||| |  ||||| || | |||||     
T  52612890 caccacctcccaaatcatcctcaatcccttccgaatcttcttatgtatcaatccccca-ctccaacactcccaatgaattaacaaatttggcggcattat 52612988  T
Q  309 aaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 374  Q
    |||||||||||| | ||||||||||||||| ||||||||||||||  | |  ||||||||||||||    
T  52612989 aaaattcaaatcgagccacaacatcacatttaaccaaacattccttccgagatcacaatgaaggaa 52613054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 109 - 380
Target Start/End: Original strand, 42773724 - 42773994
Alignment:
Q  109 acctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaat 208  Q
    |||||||||||| |||||| ||||||||||| |||||| |||| | |||  |  |||| || ||||| |  |||||||| ||  ||||||| ||||||||    
T  42773724 acctccaagacaacactttaacctcctccactaactcaacccatcccgctatgacattgttgaaaatgcactcatttctagccttccaaattacccaaat 42773823  T
Q  209 taccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattac 308  Q
     ||  ||||||| ||||||||||| || || || | |||||| |||| ||||||||| ||||||||| |||||||||||||  |  || || | ||| ||    
T  42773824 cacggcctcccaaatcatacgcaaaccattacggactttcttcttaagagatccccc-actccaacactcccaatgaataaagaggtttggaggcataac 42773922  T
Q  309 aaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 380  Q
    ||||| ||| || |||||  |||||| | ||||||||| |||||  ||||  || |||||||| ||||||||    
T  42773923 aaaatgcaagtccaaccaagacatcaaactcaaccaaatattccacgccaaatcgcaatgaagaaagagatg 42773994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 374
Target Start/End: Complemental strand, 31524853 - 31524698
Alignment:
Q  218 ccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaa 317  Q
    ||||||||| | ||| ||||||||||||||||| ||   || ||| || ||||||||| |||||||| ||||  ||||| || | |||||||||  | ||    
T  31524853 ccatatcattctcaagcccttccgaattttcttattcgaagttccacc-actccaacactcccaatggataaacaaatttggaggcattacaaagctaaa 31524755  T
Q  318 atctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 374  Q
    ||||| ||||  ||| |  || ||||||| |||||| |||| |||||||||||||||    
T  31524754 atctagccactccattagctttaaccaaatattccttgccaagtcacaatgaaggaa 31524698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 27220574 - 27220356
Alignment:
Q  32 cctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacc 131  Q
    ||||| |||||| || ||| | |||||| |||| |||||| ||| ||| || |||| ||| ||||| ||||| ||| | |||||||||| ||| || |||    
T  27220574 cctcatcaaacagtcccggggacaccaagtccactcataatacaaacatgctggaatattaaatcttcctaaaagccatctccaagacaccaccttcacc 27220475  T
Q  132 tcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgca 231  Q
    |||||||| ||||| ||||||   || || |||| ||| ||||| ||||||||||| ||| ||||||| | ||||||  || ||||||||||||||||||    
T  27220474 tcctccactaactcgtcccacaatgcgttctcatcattgaaaatacggtcatttcttgctctccaaattatccaaatcgccgcctcccatatcatacgca 27220375  T
Q  232 atcccttccgaattttctt 250  Q
    | |||||||| ||||||||    
T  27220374 aacccttccggattttctt 27220356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 247
Target Start/End: Original strand, 32699516 - 32699697
Alignment:
Q  66 tcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcat 165  Q
    ||||| |||||||| |||||||  |||||||| ||||| | | |||| ||||||| ||| || ||||||||||  || ||||||||||| | ||| ||||    
T  32699516 tcatacaacatacatgccggaatgttgaatcttcctaacaaccacctacaagacatcaccttaacctcctccattaagtcatcccaccttgtattctcat 32699615  T
Q  166 tattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaatttt 247  Q
    |||||||||| |   | ||||| ||  ||||||| |||||||| || | |||||  ||||||||| |||||||||| |||||    
T  32699616 tattaaaaatgcacccgtttcttgccttccaaattacccaaatcacaagctcccgaatcatacgcgatcccttccggatttt 32699697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 383
Target Start/End: Original strand, 5201145 - 5201398
Alignment:
Q  129 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 228  Q
    ||||||||||| |||||||||||||| ||| |  |||||||||||||     ||||||||||  ||||||| ||||||||| |  | | ||| ||||| |    
T  5201145 acctcctccactaactcatcccaccttgcaataacattattaaaaataaacccatttctcgccttccaaatgacccaaattgcggcttgccaaatcattc 5201244  T
Q  229 gcaatcccttccgaattttcttgttaatagatcccccaactcc-aacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccac 327  Q
     ||| ||||| || |||||||| ||||||  |  |||| | || ||||||||||||| |  | ||| || |||| |||||||||||||||||| ||||||    
T  5201245 tcaaacccttacggattttcttattaata--ttacccatcgcccaacattcccaatggacgaataagttgggtggcattacaaaattcaaatccaaccac 5201342  T
Q  328 aacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcga 383  Q
    | |||||  || | ||||| ||| |||||||| || ||||| ||||| | ||||||    
T  5201343 accatcaagttaagccaaatatttctagccatatcgcaatggaggaaaatatgcga 5201398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 163 - 377
Target Start/End: Complemental strand, 1160666 - 1160453
Alignment:
Q  163 cattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcc 262  Q
    ||||||| || |||||||| ||||||||| |||| | |||||||||| || ||||||| |||| |||||| || ||||| |  || || || | |  |||    
T  1160666 cattattgaagatccggtcgtttctcgctttccataacacccaaattcccgcctcccaaatcaaacgcaaacctttccgcacctttttattcaaat-tcc 1160568  T
Q  263 cccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtc 362  Q
    |||  ||||||||||||||||||||||  ||||| || | ||||||||| |||||||  | ||||| ||||| |||||||||||||||||| || | |||    
T  1160567 ccccgctccaacattcccaatgaataaacaaatttggcggcattacaaagttcaaattaagccacatcatcaaattcaaccaaacattccttgcaaagtc 1160468  T
Q  363 acaatgaaggaagag 377  Q
    | |||||||||||||    
T  1160467 aaaatgaaggaagag 1160453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 394
Target Start/End: Original strand, 2688189 - 2688551
Alignment:
Q  29 ttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcactttt 128  Q
    ||||||||| | ||| |||||| ||||||||||||| |||||| ||| ||| ||||||  |||  ||| || ||| | | ||||||| | || ||||||     
T  2688189 ttacctcaagagacactctcgg-ggcaccaactccactcataatacaaacatgccggagtattcgatcgacttaacatccacctccacgtcaacacttta 2688287  T
Q  129 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 228  Q
    ||||||||||| | ||| |||||||| |||||  ||||||||||||| |  |||||||| ||  ||||||  |||||||  ||  ||||||| ||||| |    
T  2688288 acctcctccactacctcctcccacctagcattaacattattaaaaatgcaatcatttctagcattccaaaagacccaaaccacggcctcccaaatcatcc 2688387  T
Q  229 gcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccaca 328  Q
    |||| || ||||| |||||||| || |  | |||||  ||||||||| |||||||| || | ||| || || | ||||| ||||| |||||| |||||      
T  2688388 gcaagccattccggattttcttatttagtggtcccc--actccaacactcccaatggatgaataagtttgggggcattataaaatgcaaatccaaccaag 2688485  T
Q  329 acatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcgatgaggtctctg 394  Q
    |||||  | ||||||||||||||| |||||  |||||||| || || ||||| || | ||||||||    
T  2688486 acatcgaagtcaaccaaacattccgagccaaatcacaatggagaaaaagatgagaggtggtctctg 2688551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 36517643 - 36517534
Alignment:
Q  30 tacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcactttta 129  Q
    |||||||||||||| || |||  |||||||| ||| |||||| ||||||| ||||| ||||| ||||| ||||| | | ||||||||||||  ||||| |    
T  36517643 tacctcaacaaacactcacgggagcaccaacaccactcataatacatacatgccgggacattaaatctccctaacacccacctccaagacaaaactttca 36517544  T
Q  130 cctcctccac 139  Q
    ||||||||||    
T  36517543 cctcctccac 36517534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 11239351 - 11239475
Alignment:
Q  28 cttacctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttt 127  Q
    |||| ||||||||||| || | | | ||||||| ||| || ||| |||| || ||||| ||||| ||||| ||||| | | ||||||||||||  || ||    
T  11239351 cttatctcaacaaacactcgcagggacaccaacaccactcgtaatacatgcaagccggcacattaaatcttcctaacacccacctccaagacaaaacctt 11239450  T
Q  128 tacctcctccaccaactcatcccac 152  Q
     ||||||||||| ||||||||||||    
T  11239451 cacctcctccactaactcatcccac 11239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 371
Target Start/End: Complemental strand, 10430418 - 10430270
Alignment:
Q  222 atcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatct 321  Q
    ||||||||||| || |||| |||||||||||| ||   |||  || ||||||||||||||||||||||  ||||| || | ||| | ||| ||||| ||     
T  10430418 atcatacgcaaacctttcctaattttcttgttcatgactccggca-ctccaacattcccaatgaataaacaaatttgggggcatgataaagttcaagtcc 10430320  T
Q  322 aaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaag 371  Q
    ||||||  ||| |  |||||||||||| |||||||||  || ||||||||    
T  10430319 aaccaccccataagcttcaaccaaacactcctagccaaatcgcaatgaag 10430270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 301
Target Start/End: Original strand, 9850737 - 9850777
Alignment:
Q  261 cccccaactccaacattcccaatgaataattaaattcggtg 301  Q
    ||||| ||||||||||||||||||||||| |||||| ||||    
T  9850737 ccccccactccaacattcccaatgaataaataaatttggtg 9850777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 380
Target Start/End: Complemental strand, 20794561 - 20794294
Alignment:
Q  111 ctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaatta 210  Q
    |||||||||| |||||| ||||||||||| ||||||||| | || ||| |  ||||||||||| | |  |||||||| ||  ||||||||||||||||      
T  20794561 ctccaagacatcactttaacctcctccactaactcatcctatctagcaatagcattattaaaattgcactcatttctagccttccaaatcacccaaatcc 20794462  T
Q  211 ccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaa 310  Q
    | |||||| | ||||| |||||  | ||||||| |||||| | || ||  |||||| |||||||| |||||||| ||||  |  ||||  | ||||| ||    
T  20794461 cgacctccaa-atcatccgcaactcgttccgaactttcttatgaaaaggaccccca-ctccaacactcccaatggataaaaaggttcgaaggcattataa 20794364  T
Q  311 aattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 380  Q
    |||||||||| |||||  |||||| | |||||||||||||||  ||||  ||||||||||||||||||||    
T  20794363 aattcaaatccaaccaagacatcaaactcaaccaaacattccgggccaaatcacaatgaaggaagagatg 20794294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 129 - 380
Target Start/End: Complemental strand, 14459568 - 14459318
Alignment:
Q  129 acctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatac 228  Q
    |||||||| || | |||||||||||| ||| |  ||||||||||||| |  ||||| || ||   |||||| |||||||   | |||||||||||||| |    
T  14459568 acctcctcaacaagctcatcccacctagcaatcccattattaaaaatgccctcattcctagcgcgccaaattacccaaaccgctacctcccatatcatcc 14459469  T
Q  229 gcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccaca 328  Q
    |||| ||||||||||| ||||| | ||| |||||||   ||||||||||||||||| ||||  |||||||| | ||| ||||||||||||||||||||      
T  14459468 gcaagcccttccgaatcttcttatgaattgatcccctg-ctccaacattcccaatggataaacaaattcggcggcataacaaaattcaaatctaaccaag 14459370  T
Q  329 acatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatg 380  Q
     ||||| ||  ||||| |||||| | |||| ||| |||||||| || |||||    
T  14459369 tcatcaaatgtaaccacacattctttgccaagtcgcaatgaagaaaaagatg 14459318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 327
Target Start/End: Original strand, 2030796 - 2031052
Alignment:
Q  69 taaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattat 168  Q
    |||||||||||||||||| |||| ||||||||||| | | | ||||| || | ||| |||||||||||||| || |||||||||||  || |  | ||||    
T  2030796 taaaacatacacgccggagcattaaatctacctaacaaccatctccacgataacacctttacctcctccactaattcatcccaccttacaataac-ttat 2030894  T
Q  169 taaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaac 268  Q
    | |||||      |||||||||  ||||||||||||||||  | || | ||| ||||| | ||| |||||||| || ||||| |||| ||  |||||  |    
T  2030895 tgaaaataaccctatttctcgccttccaaatcacccaaatagcaacttgccaaatcattctcaaacccttccggatcttcttattaagagcaccccccgc 2030994  T
Q  269 tccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccac 327  Q
     |||||| |||||||| |||| |||||| |||| |||||||||||||||||| ||||||    
T  2030995 -ccaacactcccaatggataaataaattgggtggcattacaaaattcaaatccaaccac 2031052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 374
Target Start/End: Complemental strand, 38784946 - 38784786
Alignment:
Q  213 acctcccatatcatacgcaatcccttccgaattttcttgttaatagatcccccaactccaacattcccaatgaataattaaattcggtgacattacaaaa 312  Q
    ||||||||||||||||||||||| ||||||||||||||||| | | ||||||| ||||||||||| || ||||||||  ||||| || | ||| | |||     
T  38784946 acctcccatatcatacgcaatcctttccgaattttcttgttgaaaaatccccc-actccaacatttccgatgaataaacaaattaggaggcataataaac 38784848  T
Q  313 ttcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaa 374  Q
      |||||||||||    ||||| ||| | |||||||||||| |||| ||||||||| |||||    
T  38784847 accaaatctaacctagtcatcaaattaagccaaacattcctcgccaagtcacaatgtaggaa 38784786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 330
Target Start/End: Original strand, 4636777 - 4636944
Alignment:
Q  162 tcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccgaattttcttgt-taatagat 260  Q
    |||||||| ||||| ||  ||||||| ||| |||| |  |||||||||||||||||||| ||||| | ||||  ||| ||||| ||||| | |||| |      
T  4636777 tcattattgaaaatacgcccatttctagctttccacaaaacccaaattaccacctcccaaatcatcctcaatagctttcgaatcttcttatgtaatgg-- 4636874  T
Q  261 cccccaactccaacattcccaatgaataattaaattcggtgacattacaaaattcaaatctaaccacaac 330  Q
    ||||| ||||||||| |||||||||||||  ||||| || | |||||||||||||||||| | |||||||    
T  4636875 ccccccactccaacactcccaatgaataaacaaattaggcggcattacaaaattcaaatcgagccacaac 4636944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 383
Target Start/End: Complemental strand, 36251155 - 36251064
Alignment:
Q  292 aaattcggtgacattacaaaattcaaatctaaccacaacatcacattcaaccaaacattcctagccatgtcacaatgaaggaagagatgcga 383  Q
    ||||| |||| |||||||||||||||||||||||||||||| |  || ||||||| |||| | ||||| |||||| |||| || ||||||||    
T  36251155 aaatttggtggcattacaaaattcaaatctaaccacaacattaagtttaaccaaatattcttcgccatatcacaaggaagaaaaagatgcga 36251064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 55854883 - 55855020
Alignment:
Q  113 ccaagacagcacttttacctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattacc 212  Q
    |||||||| |||||| ||||||||||  | ||||||||||||  ||||  |||| |||||||  | | ||||||| ||| ||||||| ||| |||| ||     
T  55854883 ccaagacatcactttcacctcctccataagctcatcccacctatcattcacattgttaaaaacactggcatttcttgctttccaaataaccaaaatcact 55854982  T
Q  213 acctcccatatcatacgcaatcccttccgaattttctt 250  Q
    |||||||| ||||||||||| ||| |||| | ||||||    
T  55854983 acctcccaaatcatacgcaaccccgtccgcactttctt 55855020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 31 - 247
Target Start/End: Original strand, 7114944 - 7115160
Alignment:
Q  31 acctcaacaaacaatctcggaggcaccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttac 130  Q
    |||||| ||||||||| ||  | ||||||| ||| || || ||||| || ||||| | ||| ||||| ||||| | | ||||||| ||||  || || ||    
T  7114944 acctcatcaaacaatcccgaggacaccaacaccactcgtagaacatgcaagccgggatattaaatctccctaataaccacctccacgacataaccttgac 7115043  T
Q  131 ctcctccaccaactcatcccacctcgcattttcattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgc 230  Q
    ||||||||| |||||||||||||| ||  | ||||| || ||||| |   ||||||||||  ||||||| |||||||| || |||||||| ||||  | |    
T  7115044 ctcctccactaactcatcccacctagctatctcattgttgaaaatacaaccatttctcgccctccaaataacccaaatcacaacctcccaaatcaacctc 7115143  T
Q  231 aatcccttccgaatttt 247  Q
    | ||||||||| |||||    
T  7115144 attcccttccggatttt 7115160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Original strand, 38092895 - 38092991
Alignment:
Q  56 ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccac 152  Q
    ||||| |||||||||||||||||| |||| || ||| ||||| ||||| | | || |||| || |  || || ||||||||||| ||||||||||||    
T  38092895 ccaacaccattcataaaacatacatgccgaaatattaaatctccctaataaccacttccatgatataaccttaacctcctccactaactcatcccac 38092991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 52867217 - 52867174
Alignment:
Q  165 ttattaaaaatccggtcatttctcgctgtccaaatcacccaaat 208  Q
    ||||||||||||||||||||||||||| ||||||| | ||||||    
T  52867217 ttattaaaaatccggtcatttctcgctttccaaataatccaaat 52867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 21977441 - 21977363
Alignment:
Q  163 cattattaaaaatccggtcatttctcgctgtccaaatcacccaaattaccacctcccatatcatacgcaatcccttccg 241  Q
    ||||||||||||| || ||||| ||| || ||||||||||||| ||  | |||||||| ||||||||||| || |||||    
T  21977441 cattattaaaaatgcgttcattcctcactttccaaatcacccatatggcaacctcccaaatcatacgcaaacctttccg 21977363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 152
Target Start/End: Complemental strand, 43252 - 43156
Alignment:
Q  56 ccaactccattcataaaacatacacgccggaacattgaatctacctaagagcaacctccaagacagcacttttacctcctccaccaactcatcccac 152  Q
    ||||| |||||||||||||||||| ||||| | ||| ||||| ||||| | | || || ||||||  || || ||||| ||||| ||||||||||||    
T  43252 ccaacaccattcataaaacatacatgccggcatattaaatctccctaataaccacttcaaagacataaccttaacctcatccactaactcatcccac 43156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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