View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8383_low_9 (Length: 393)
Name: NF8383_low_9
Description: NF8383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8383_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 38512193 - 38512581
Alignment:
| Q |
1 |
tgtgcatatggacataaagtagtgcgcaatggtgaaagtggcagcttcataagtgtttatacctaatttcgtgaagagttcaatagataaaatagtttta |
100 |
Q |
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| T |
38512193 |
tgtgcatatggacataaagtagtgcgcaatggtgaaagtggcagcttcataagtgtttatacctaatttcatgaagagttcaatggataaaatagtttta |
38512292 |
T |
|
| Q |
101 |
cactgtcatccagatatatctctgcaaatgtttgtgaagatattttaggatttaaaatagcggtgtggctcaatgaagagatatgatttgacgacaatgt |
200 |
Q |
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| T |
38512293 |
cactgtcatccagatatatctctgcaaatgtttgtgaagatattttaggatttaaaatagcggtgtggctcaatgaagagatatgatttgacgacaatgt |
38512392 |
T |
|
| Q |
201 |
aaaactatttcacactttcaaaatcagtcaatataactcatatttttcaaagctgtcatttagtttgtccacaaataccgattaagcttttaaggacttt |
300 |
Q |
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| T |
38512393 |
aaaactatttcacactttcaaaatcagtcaatataactcatatttttcaaagctgtcatttagtttgtccacaaataccgattaagcttttaaggacttt |
38512492 |
T |
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| Q |
301 |
tttgcaagtgaagaaacataaacttattctaactgagaaactcccataaactagaatttggtccaagctagcgctttatatagtagcag |
389 |
Q |
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| T |
38512493 |
tttgcaagtgaagaaacataaacttattctaactgagaaactcccataaactagaatttggtccaagctagcgctttatatagtagcag |
38512581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 349
Target Start/End: Original strand, 1743503 - 1743554
Alignment:
| Q |
298 |
ttttttgcaagtgaagaaacataaacttattctaactgagaaactcccataa |
349 |
Q |
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| T |
1743503 |
ttttttgtaagtgaagaaccataaacttattctaaatgagaagctcccataa |
1743554 |
T |
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