View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8384_low_1 (Length: 719)
Name: NF8384_low_1
Description: NF8384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8384_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 26011134 - 26010701
Alignment:
| Q |
17 |
acatcatttcgtgaaataaatgtgagtgttaaacattttgagtcatctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatct |
116 |
Q |
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| T |
26011134 |
acatcatttcgtgaaataaatgtgagtgttatacattttgagtcatctatcgacacaaattttggttatttgtcaaactaccaaaacttcggtggcatct |
26011035 |
T |
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| Q |
117 |
attattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaataattaataactcataaatctatcga |
216 |
Q |
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| T |
26011034 |
attattggcaaaatttgaaatttgtcaaagagaaccaaagtcaacacaaattcaacattcctataaccatttaacaattaataactca--aatctat--- |
26010940 |
T |
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| Q |
217 |
aaacacagaaggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatcaatggatatcataagccacaatgcgttttctctata |
316 |
Q |
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| T |
26010939 |
----------ggatttgacaaccattgtaagttcgtcggagagggtgcagatagaaacaaaatgaatggatatcacaagccacaatgcgttttctctata |
26010850 |
T |
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| Q |
317 |
aactctggtaatggagagaacgtggccattcaacaagaggtgtattaaagcaccaactcaacgtaatagtagctagcctaacatacaaaaatttattttg |
416 |
Q |
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| T |
26010849 |
aactctggtaatggaga--acgtggccattcaacaagaggtgtattaaagcaccaactcaacgtaatagtagctagcctaacatacaaaaatgtattttg |
26010752 |
T |
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| Q |
417 |
atttcaagtgcaccaataa-----catactaataacaaacgtttgcttgcc |
462 |
Q |
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| T |
26010751 |
atttcaagtgcaccaataacataacatactaataacaaacgtttgcttgcc |
26010701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 502 - 704
Target Start/End: Complemental strand, 26010661 - 26010463
Alignment:
| Q |
502 |
tcatgaattacattattaatttagtaacccatatcatttaattgcatnnnnnnnntgaaagatatttttgatattctattattaaataatatgaagaagn |
601 |
Q |
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| T |
26010661 |
tcatgaattagattattaatttagtaacccatatcatttaattgcataaaaaaaatgaaagatatttttgatattctattattaaataatatgaagaaga |
26010562 |
T |
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| Q |
602 |
nnnnnntatatagctagtgtagatcgatctataggctagcacttgaaggacttcctaagcttacacttaactgggagttctagggcaagtttaggatcaa |
701 |
Q |
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| T |
26010561 |
aaa----aaatagctagtgtagatcgatctataggctagcacttgaaggacttcctaagcttacacttaactgggagttctagggcaagtttaggatcaa |
26010466 |
T |
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