View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8384_low_5 (Length: 309)
Name: NF8384_low_5
Description: NF8384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8384_low_5 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 43 - 309
Target Start/End: Complemental strand, 41654982 - 41654715
Alignment:
| Q |
43 |
ttcatcaatgaaatatagatgaaacagtatatcctaatataaaatatatgacaatatatgtttaaaacctaaacacacggnnnnnnnnn-tgtagacctg |
141 |
Q |
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| T |
41654982 |
ttcatcaatgaaatatagatgaaacagtatatcctaatataaaatatatgacaatatatgtttaaaaccaaaacactcggaaaaaaaaaatgtagacctg |
41654883 |
T |
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| Q |
142 |
catgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctctg |
241 |
Q |
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| T |
41654882 |
catgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctctg |
41654783 |
T |
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| Q |
242 |
agagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654782 |
agagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgttt |
41654715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 140 - 309
Target Start/End: Original strand, 43213279 - 43213448
Alignment:
| Q |
140 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctc |
239 |
Q |
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| T |
43213279 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatctcagctc |
43213378 |
T |
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| Q |
240 |
tgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgttt |
309 |
Q |
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| T |
43213379 |
taagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgttt |
43213448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 41650276 - 41650175
Alignment:
| Q |
208 |
tacctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
307 |
Q |
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||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41650276 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41650177 |
T |
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| Q |
308 |
tt |
309 |
Q |
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|| |
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| T |
41650176 |
tt |
41650175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 43224083 - 43224183
Alignment:
| Q |
209 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
308 |
Q |
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|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43224083 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
43224182 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
43224183 |
t |
43224183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 43206374 - 43206474
Alignment:
| Q |
209 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
308 |
Q |
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||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
43206474 |
t |
43206474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 209 - 309
Target Start/End: Original strand, 43227884 - 43227984
Alignment:
| Q |
209 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
308 |
Q |
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|||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43227884 |
acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43227983 |
T |
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| Q |
309 |
t |
309 |
Q |
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| T |
43227984 |
t |
43227984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 43223994 - 43224022
Alignment:
| Q |
44 |
tcatcaatgaaatatagatgaaacagtat |
72 |
Q |
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| T |
43223994 |
tcatcaatgaaatatagatgaaacagtat |
43224022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 5073616 - 5073712
Alignment:
| Q |
209 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggat |
305 |
Q |
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||||||||| |||||||||||| |||||||| | ||| |||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| |
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| T |
5073616 |
acctgcatagaaagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggat |
5073712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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