View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8384_low_6 (Length: 305)
Name: NF8384_low_6
Description: NF8384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8384_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 44969303 - 44969591
Alignment:
| Q |
1 |
ataagagtatgtactccaagttctttctcaataaaagaac-taattattggttgagatatacttttctgccaacttggctagctcaagagttttaaatcc |
99 |
Q |
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| T |
44969303 |
ataagagtatgtactccaagttctttctcaataaaagaacctaattattggttgagatatacttttctgccaacttggctagctcaagagttttaaatcc |
44969402 |
T |
|
| Q |
100 |
atatggtgaccaccaatcaatagaactcgtggttacaacctctagttgatttgaagacattgcatatattccattctttgtgtgaaacgaaacatgtcaa |
199 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
44969403 |
atatgatgaccaccaatcaatagaactcgtggttacaacctccggttgatttgaagacattgcatatattccattctttgtgt-----gaaacatgttaa |
44969497 |
T |
|
| Q |
200 |
actgataactttaaagtttttgttcctcttcattttaatatannnnnnncaaatgcttgcatagtgtagtgtcctc-tcattatatgatgtcca |
292 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44969498 |
actgataactttaaagtttttgttcctcctcattttaatatatttttttcaaatgcttgcatagtgtagtgtcctcttcattatatgatgtcca |
44969591 |
T |
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