View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8385_high_1 (Length: 635)
Name: NF8385_high_1
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 561; Significance: 0; HSPs: 17)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 13 - 617
Target Start/End: Complemental strand, 27215704 - 27215100
Alignment:
| Q |
13 |
agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215704 |
agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagattaa |
27215605 |
T |
|
| Q |
113 |
tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215604 |
tcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacat |
27215505 |
T |
|
| Q |
213 |
taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggaggagc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27215504 |
taattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttactaaattcatttgtatttgtatatgcagtggttggaggagc |
27215405 |
T |
|
| Q |
313 |
taaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttggga |
412 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215404 |
taaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttggga |
27215305 |
T |
|
| Q |
413 |
tctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgcca |
512 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27215304 |
tctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgcca |
27215205 |
T |
|
| Q |
513 |
ccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaaga |
612 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215204 |
ccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaaga |
27215105 |
T |
|
| Q |
613 |
tttct |
617 |
Q |
| |
|
||||| |
|
|
| T |
27215104 |
tttct |
27215100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 84 - 617
Target Start/End: Complemental strand, 27221595 - 27221062
Alignment:
| Q |
84 |
atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg |
183 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |
|
|
| T |
27221595 |
atattcacaagcctgcaaaacaagattcatcaaaagccatatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatgg |
27221496 |
T |
|
| Q |
184 |
tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattc |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27221495 |
tacgtacatatatcaatacataactacattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttattaaattcattt |
27221396 |
T |
|
| Q |
284 |
gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctc |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27221395 |
gtatttgtatatgcagtggttggaggagctaaggtgactttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctc |
27221296 |
T |
|
| Q |
384 |
agctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgctt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
27221295 |
agctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtcgggtagattttggggccgaaccggatgctt |
27221196 |
T |
|
| Q |
484 |
caacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaa |
583 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27221195 |
caacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccagcaacattggtagaa |
27221096 |
T |
|
| Q |
584 |
ataaccgtagcaacaaacgggggacaagatttct |
617 |
Q |
| |
|
||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
27221095 |
ataacggtagcaacagacgggggacaagacttct |
27221062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 284 - 617
Target Start/End: Original strand, 27443468 - 27443801
Alignment:
| Q |
284 |
gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctc |
383 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27443468 |
gtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctc |
27443567 |
T |
|
| Q |
384 |
agctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgctt |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443568 |
agctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgctt |
27443667 |
T |
|
| Q |
484 |
caacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaa |
583 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443668 |
caacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaa |
27443767 |
T |
|
| Q |
584 |
ataaccgtagcaacaaacgggggacaagatttct |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27443768 |
ataaccgtagcaacaaacgggggacaagatttct |
27443801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 293 - 617
Target Start/End: Complemental strand, 27433133 - 27432809
Alignment:
| Q |
293 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
392 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
27433133 |
tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcctcagctatcaa |
27433034 |
T |
|
| Q |
393 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
492 |
Q |
| |
|
| || ||||| ||||| ||| |||||| || ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
27433033 |
caacgggttttgagttaggacctggagcaacaattgaggtggaccttccatcaccatggtcgggtcgattttggggacgaaccggatgctccaacaacaa |
27432934 |
T |
|
| Q |
493 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
592 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432933 |
tggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
27432834 |
T |
|
| Q |
593 |
gcaacaaacgggggacaagatttct |
617 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27432833 |
gcaacaaacgggggacaagatttct |
27432809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 293 - 617
Target Start/End: Complemental strand, 27208053 - 27207729
Alignment:
| Q |
293 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
27208053 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
27207954 |
T |
|
| Q |
393 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
492 |
Q |
| |
|
| || ||||| ||||| ||| |||||| || ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| | ||||||| |
|
|
| T |
27207953 |
caacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctccgacaacaa |
27207854 |
T |
|
| Q |
493 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
592 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
27207853 |
cggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccagcaacactggtagaaataacaata |
27207754 |
T |
|
| Q |
593 |
gcaacaaacgggggacaagatttct |
617 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
27207753 |
gcatccaacgggggacaagatttct |
27207729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 306 - 617
Target Start/End: Complemental strand, 27389334 - 27389023
Alignment:
| Q |
306 |
gaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcga |
405 |
Q |
| |
|
||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27389334 |
gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacctcagctatcaacaacaggtttcga |
27389235 |
T |
|
| Q |
406 |
gttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagc |
505 |
Q |
| |
|
||| ||| |||||| || | |||| ||| |||| || |||||||| ||||||||||||| |||||||||||||| | |||||| ||| |||||| |
|
|
| T |
27389234 |
gttaggacctggagcaacgaactcagcggaaattccttccccatggtcaggtcgattttgggcccgaaccggatgctcaaccaacaacggacagtttact |
27389135 |
T |
|
| Q |
506 |
tgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggg |
605 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| ||||| ||||| || || ||| |||| || | |
|
|
| T |
27389134 |
tgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaattacagtggcatcaaatggag |
27389035 |
T |
|
| Q |
606 |
gacaagatttct |
617 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27389034 |
gacaagatttct |
27389023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 293 - 617
Target Start/End: Complemental strand, 27410303 - 27409979
Alignment:
| Q |
293 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
392 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||| || ||| || |||| ||||| |||||| |
|
|
| T |
27410303 |
tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaacctttactacagctcaaacccctcaattatcaa |
27410204 |
T |
|
| Q |
393 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
492 |
Q |
| |
|
| |||||||| ||||||||| ||||| || || ||| ||||||| || ||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
27410203 |
caacaggttttgagttgggacaaggagtgacgtactcggtgaaccttccttcttcatggtctggtcgattttgggcaagaaccggatgctcaatcaacaa |
27410104 |
T |
|
| Q |
493 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
592 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| || || ||||| ||| | |
|
|
| T |
27410103 |
agaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaattaccatg |
27410004 |
T |
|
| Q |
593 |
gcaacaaacgggggacaagatttct |
617 |
Q |
| |
|
||| |||| || ||||||||||||| |
|
|
| T |
27410003 |
gcatcaaatggaggacaagatttct |
27409979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 84 - 282
Target Start/End: Original strand, 27443248 - 27443443
Alignment:
| Q |
84 |
atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg |
183 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
27443248 |
atattcacaagcctgcaaaacaagattcatcaa--gccatatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatgg |
27443345 |
T |
|
| Q |
184 |
tacgtacatatatcaatacataactacattaatt---ttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattca |
280 |
Q |
| |
|
|| |||||||| ||| ||||||||||||| |||||||| ||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
27443346 |
tat----atatatcactactcaactacattaattaatttccatatgattaatcaattcatttagctaagtaaatttttcttcttgcgcttaataaattca |
27443441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 297 - 489
Target Start/End: Complemental strand, 27455277 - 27455087
Alignment:
| Q |
297 |
cagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgac |
396 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||| | |||||| | || ||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
27455277 |
cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagagac-aaaaacctcagctatgaacgac |
27455179 |
T |
|
| Q |
397 |
aggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaa |
489 |
Q |
| |
|
| ||||||| ||||||||| |||| || |||||||||||||||||||||||||| || ||| ||||||| ||||||| |||||||| |||||| |
|
|
| T |
27455178 |
aagtttcgacttgggatctagagt-actatttcagtggaccttccatcaccatgatcaggttgattttgaggccgaatcggatgctccaacaa |
27455087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 122 - 282
Target Start/End: Complemental strand, 27208246 - 27208086
Alignment:
| Q |
122 |
atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc |
221 |
Q |
| |
|
||||||||||||| ||| |||||||||| | ||| |||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
27208246 |
atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc |
27208151 |
T |
|
| Q |
222 |
atataattaatc----aattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
282 |
Q |
| |
|
||||| |||||| |||||| |||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
27208150 |
atatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatt |
27208086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 84 - 282
Target Start/End: Complemental strand, 27433367 - 27433166
Alignment:
| Q |
84 |
atattcacaagcctgcaaaacaagattaatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacgg |
183 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||| ||||||| | ||| |||| || |||||||||||||| || |
|
|
| T |
27433367 |
atattcacaagcctgcaaaacaagattaatc--aagtcatatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatgg |
27433270 |
T |
|
| Q |
184 |
tacgtacatatatcaata--cat--aactacattaattttccata----taattaatcaattcacttagctaagttaatttctcttcatgcgcttaataa |
275 |
Q |
| |
|
|| | |||||||| || ||| |||||||||||||||||||| |||| ||| |||||| |||||| | || ||| ||||||||| | ||||||| |
|
|
| T |
27433269 |
ta---atatatatcagtactcattcaactacattaattttccatatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataa |
27433173 |
T |
|
| Q |
276 |
attcatt |
282 |
Q |
| |
|
||||||| |
|
|
| T |
27433172 |
attcatt |
27433166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 615
Target Start/End: Original strand, 27415756 - 27416080
Alignment:
| Q |
295 |
tgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacatta-actggagaccaaaaacc--tcagctatca |
391 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||| ||| ||| | |||| | ||| |||||| |
|
|
| T |
27415756 |
tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaaccttatacttaggttcaaattacattcaactatca |
27415855 |
T |
|
| Q |
392 |
acgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa-ccggatgcttcaacaac |
490 |
Q |
| |
|
|| |||||||| ||||||| | |||| || | |||||||||||||| | |||| | || || |||||||| ||||| ||||||||| ||||| |
|
|
| T |
27415856 |
acaacaggttttgagttggaacaaggagaaacgaaatcagtggaccttccttatccattggcttatcaattttgggcccgaaaccggatgctcaaacaat |
27415955 |
T |
|
| Q |
491 |
aatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccg |
590 |
Q |
| |
|
|| ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || ||| |||||||||||||||| || || | | |
|
|
| T |
27415956 |
aacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgtaattacaccagcaacattggttgacattaaag |
27416055 |
T |
|
| Q |
591 |
tagcaacaaacgggggacaagattt |
615 |
Q |
| |
|
| ||| |||| || ||||||||||| |
|
|
| T |
27416056 |
tggcatcaaatggaggacaagattt |
27416080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 282
Target Start/End: Complemental strand, 27455409 - 27455314
Alignment:
| Q |
191 |
atatatcaatacataactacattaattttccatat----aattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
282 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| ||| |||||| |||||| |||| ||| ||||||||| | |||||||||||||| |
|
|
| T |
27455409 |
atatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggttaataaattcatt |
27455314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 617
Target Start/End: Complemental strand, 27454844 - 27454726
Alignment:
| Q |
499 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
598 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
599 |
aacgggggacaagatttct |
617 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttct |
27454726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 27443191 - 27443241
Alignment:
| Q |
13 |
agcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaa |
64 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
27443191 |
agcagagaacaacttcatcaa-tcaccttcaaacagcaaactacaatcgaaa |
27443241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27390304 - 27390262
Alignment:
| Q |
143 |
cgtgttgctctgtgccttagttttgcattcctcttctacggta |
185 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
27390304 |
cgtgttgctctctgccttagctttgcattcctcttctatggta |
27390262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 27410539 - 27410497
Alignment:
| Q |
143 |
cgtgttgctctgtgccttagttttgcattcctcttctacggta |
185 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
27410539 |
cgtgttgctctctgccttagctttgcattcctcttctatggta |
27410497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University