View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_high_11 (Length: 374)
Name: NF8385_high_11
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 374
Target Start/End: Complemental strand, 30351113 - 30350753
Alignment:
| Q |
14 |
ttattctattgttaggacttaggaagttgcatagtgcaaggttaattagcactagcttctatatactattttcaacttaatagggaataaagtgtgatgt |
113 |
Q |
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| T |
30351113 |
ttattctattgttaggacttaggaagttgcatagtgcaaggttaattagcactagcttctatatactattttcaacttaatagggaataaagtgtgatgt |
30351014 |
T |
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| Q |
114 |
ggtcatgtcgacccaataaaaatatgatttggacttcatgttaaaatatcattcgaagctaataaataactaaaatcgaacccacttaggttgggttaac |
213 |
Q |
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| T |
30351013 |
ggtcatgtcgacccaataaaaatatgatttggacttcatgttaaaatatcattcgaaactaataaataactaaaatcgaacccacttagaatgagttaac |
30350914 |
T |
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| Q |
214 |
ctaatgatattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattcttccacaatatatacaaagaagagagatattacggattcc |
313 |
Q |
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| T |
30350913 |
ctaatgatattgacttaagatttgagagtgagttcatcatcaagatctcatgtttgattcttccacagtatatacaaagaagagagatattgcggattcc |
30350814 |
T |
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| Q |
314 |
taccgcgtcccgacgcatcaaatgtctccacgacatagtatattaatcttttacataattg |
374 |
Q |
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| T |
30350813 |
taccgcgtcccaacgcttcaaatgtctccacgacatagtatattaatcttgtacataattg |
30350753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 273
Target Start/End: Complemental strand, 34041657 - 34041588
Alignment:
| Q |
204 |
ttgggttaacctaatgatattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattc |
273 |
Q |
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| T |
34041657 |
ttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattc |
34041588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 274
Target Start/End: Complemental strand, 27223182 - 27223129
Alignment:
| Q |
221 |
tattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgattct |
274 |
Q |
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| T |
27223182 |
tattgacttaggatctgggagtgtgctcttcttcaaggtctcaggttcgattct |
27223129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 9964445 - 9964513
Alignment:
| Q |
204 |
ttgggttaacctaatgatattgacttaggatctgggagtgagttcatcatcaagatctcaggtttgatt |
272 |
Q |
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| T |
9964445 |
ttgggttagcctgatgttattgacttgggatctgggagtgtgctcttcctcaatgtctcaggtttgatt |
9964513 |
T |
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