View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8385_high_2 (Length: 633)
Name: NF8385_high_2
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 22 - 616
Target Start/End: Complemental strand, 12120802 - 12120207
Alignment:
| Q |
22 |
catttattgagttgttgagagcagtgcctaagactccaacttcagatagattagaaagtttagctgcaatctgacctacttgagtttccaaatattaatg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12120802 |
catttattgagttgttgagagcagtgcctaagactccagcttcagatagattagaaagtttagttgcaatttgacctacttgagtttccaaatattaatg |
12120703 |
T |
|
| Q |
122 |
gaggatttagtattcctttggggtccctcatcannnnnnnn-acaatgcttcaacatggtcctatgttgtctacatatactgagtaagcatttcccccat |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12120702 |
gaggattcagtattcctttggggtccctcatgatttttttttacaatgcttcaacatggtcctatgttgtctacatatactgagtaagcatttcctccat |
12120603 |
T |
|
| Q |
221 |
attcttcttcggtggttgttgttgtgctgcttcttgaggtggattgagagtgttgtttcctctccattagaagttaggatgatccgtctaaccagaattg |
320 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
12120602 |
attcttcttcgatggttgttgttgtgctgcttcttgaggtggattgagagtgttgtttcctctccattagaagttaggatgatccgcctaaccagaattg |
12120503 |
T |
|
| Q |
321 |
taagtgttagagtagggattactttgttgtcttgtgtatgatcccacgtatctgacttgctcctcgaggtccaaatttcagcctgtaaaagtcttgacgg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12120502 |
taagtgttagagtagggattactttgttgtcttgtgtatgatcccatgtatctgacttgttcctcgaggtccaaatttcagcctgtaaaagtcttgacgg |
12120403 |
T |
|
| Q |
421 |
acacatccagacgtatgaacttaccttccacgtcttccagtcctttctcgataagctcaagaattttatccttaaaggaaaatacatactccaacttcgc |
520 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12120402 |
acacgtccagacgtatgaacttaccttccacgtcttctagccctttctcggtaagctcaagaattttatccttaaaggaaaatacatcctccaacttcgc |
12120303 |
T |
|
| Q |
521 |
aacacctatttccaaagtagccattatagcaacaacaggaccctcgtcaacctggtccactaagaacgcatatccactaagagccaccaacttgag |
616 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12120302 |
aacacctagctccaatgtagctattatagcaacaacaggaccctcgtcaacctggtccactaagaacacatatccactaagagccaccaacttgag |
12120207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University