View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8385_high_21 (Length: 249)
Name: NF8385_high_21
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_21 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 3816596 - 3816415
Alignment:
| Q |
15 |
ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||| |
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|
| T |
3816596 |
ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatct |
3816497 |
T |
|
| Q |
115 |
tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta |
196 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3816496 |
tgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta |
3816415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 4024189 - 4024013
Alignment:
| Q |
13 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| ||||||| ||||| | | |||||||||||||||||||||||| |||||| || ||||| |
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|
| T |
4024189 |
tcttcctcaagggcttcaatcttttccaactgatctaagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaat |
4024090 |
T |
|
| Q |
113 |
cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttc |
189 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| || |||||| ||||| |
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|
| T |
4024089 |
cttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttc |
4024013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 3809026 - 3808839
Alignment:
| Q |
9 |
attgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcaga |
108 |
Q |
| |
|
|||||||||||||| || |||||||||||||| | | ||| |||||||||||||| || || ||||||||||||||||||||||| |||||| |||| |
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|
| T |
3809026 |
attgtcttcctcaaaggtttcaatcttttccaactaatctaagatatcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcaga |
3808927 |
T |
|
| Q |
109 |
gaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta |
196 |
Q |
| |
|
|||||||||||||||| |||||| ||||| | | |||||||||||| |||||||||||||||||||||| | |||||||||||| |
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|
| T |
3808926 |
gaatcttgttatattgaacttgtatgatagtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaatta |
3808839 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 3934086 - 3934252
Alignment:
| Q |
15 |
ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| | | ||||||||||||| || | |||||||||||||||||||||||| |||||| |||||||||| |
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|
| T |
3934086 |
ttcctcaagggcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatct |
3934185 |
T |
|
| Q |
115 |
tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat |
181 |
Q |
| |
|
||||||||||||||||| ||||| | | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
3934186 |
tgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatat |
3934252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 3956586 - 3956760
Alignment:
| Q |
2 |
ggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
101 |
Q |
| |
|
||||| ||| || ||||| ||||| |||||||||||||| || | |||||||||||||||||| || | ||||||||||||| || ||||||| |||| |
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|
| T |
3956586 |
ggtttggatcgtattcctgaagggattcaatcttttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctcagagaagtttt |
3956685 |
T |
|
| Q |
102 |
cttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattg |
176 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| ||| ||| | ||||| |||||||||||||||||| |||||| |
|
|
| T |
3956686 |
ctgcagagaatcttgttatattggacctgtcaggtagcctactggaaaaactttggtgtggagtgcagataattg |
3956760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3985989 - 3985821
Alignment:
| Q |
13 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat |
112 |
Q |
| |
|
||||||||||||||||||| |||||||| || | ||| ||||||||||||| | | | ||||||| | ||||| ||| |||| |||||| ||||||| |
|
|
| T |
3985989 |
tcttcctcaagggcttcaaccttttccaactgatctaagatatcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaa |
3985890 |
T |
|
| Q |
113 |
cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat |
181 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| | |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
3985889 |
cttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatat |
3985821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 4217620 - 4217452
Alignment:
| Q |
13 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||| || | ||| |||||||| |||| || | |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4217620 |
tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaacttttctgcagagaat |
4217521 |
T |
|
| Q |
113 |
cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat |
181 |
Q |
| |
|
|||||||||||| ||||| |||||| | | |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
4217520 |
cttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatat |
4217452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 4001295 - 4001127
Alignment:
| Q |
13 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||| || | ||| |||| || ||||| | | | ||||||||||||||||||| |||| |||||| | ||||| |
|
|
| T |
4001295 |
tcttcctcaagggcttcaatctttcccaactgatctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaat |
4001196 |
T |
|
| Q |
113 |
cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat |
181 |
Q |
| |
|
||||||||||||||||| ||| |||||| | | ||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
4001195 |
cttgttatattggacttttcacatagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatat |
4001127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 3920865 - 3921031
Alignment:
| Q |
15 |
ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct |
114 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| ||| |||||||||||||| | | | |||||||||||||||| ||||||| |||| | | |||||||| |
|
|
| T |
3920865 |
ttcctcaagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatct |
3920964 |
T |
|
| Q |
115 |
tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat |
181 |
Q |
| |
|
||||||||||||||||| | ||| | | |||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
3920965 |
tgttatattggacttgtatcttggtcgaatggaaaagctatggtgtggagtacaggtaattgaatat |
3921031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 3800589 - 3800482
Alignment:
| Q |
13 |
tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||| |||||||||||||| | | |||||||||||||||||||||||| |||||| || ||||| |
|
|
| T |
3800589 |
tcttcctcaagggcttcaatcttttccaaatgatctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaat |
3800490 |
T |
|
| Q |
113 |
cttgttat |
120 |
Q |
| |
|
|||||||| |
|
|
| T |
3800489 |
cttgttat |
3800482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 4008942 - 4008825
Alignment:
| Q |
73 |
ccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggta |
172 |
Q |
| |
|
||||||||||||||| ||| |||| |||||| | ||||||||||||||||| |||||||||| ||| | | | ||||||||||||| ||||||| ||||| |
|
|
| T |
4008942 |
ccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggta |
4008843 |
T |
|
| Q |
173 |
attggatatttatcttcc |
190 |
Q |
| |
|
|||| ||| |||||||| |
|
|
| T |
4008842 |
attgactatgtatcttcc |
4008825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 4017574 - 4017510
Alignment:
| Q |
107 |
gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggt |
171 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| | |||||||||| ||| |||||||||||| |
|
|
| T |
4017574 |
gagaaactcgttatattggacttgtcatatagtcgagttgaaaagctctggcatggagtgcaggt |
4017510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 3964730 - 3964796
Alignment:
| Q |
107 |
gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaa |
173 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| | ||||||| || ||| |||||||||||||| |
|
|
| T |
3964730 |
gagaaactcgttatattggacttgtcatatagtcgagttgaaaaactctggcatggagtgcaggtaa |
3964796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 13396974 - 13396800
Alignment:
| Q |
2 |
ggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt |
101 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| ||||||| || | ||| ||||||| |||||| | | |||||||||||||||||||||||| |||| |
|
|
| T |
13396974 |
ggtttggatcgtcttcctcaagggcttcaattttttccaactgatctaagatatctttattggatgcattaccctctaaaatcattcccagagaagtttt |
13396875 |
T |
|
| Q |
102 |
cttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattg |
176 |
Q |
| |
|
|| || |||||||||||| ||| |||| ||||||| || | |||||||||||||||||||| |||||||||| |
|
|
| T |
13396874 |
ctgttgataatcttgttatactgggcttgccatatagccttgtagaaaagctttggtgtggagtacaggtaattg |
13396800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 27682682 - 27682726
Alignment:
| Q |
196 |
ataacacttccctcattctttctcttcctcccgtagctctctctg |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27682682 |
ataacacttccctcattctttcttttcctcccgtagctctctctg |
27682726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27690003 - 27690045
Alignment:
| Q |
196 |
ataacacttccctcattctttctcttcctcccgtagctctctc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27690003 |
ataacacttccctcattctttcttttcctcccgtagctctctc |
27690045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 30230282 - 30230240
Alignment:
| Q |
196 |
ataacacttccctcattctttctcttcctcccgtagctctctc |
238 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30230282 |
ataacacttccctcattctttcttttcctcccgtagctctctc |
30230240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 13143937 - 13143892
Alignment:
| Q |
196 |
ataacacttccctcatt-ctttctcttcctcccgtagctctctctg |
240 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
13143937 |
ataacactttcctcatttctttcttttcctcccgtagctctctctg |
13143892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 31712534 - 31712578
Alignment:
| Q |
196 |
ataacacttccctcattctttctcttcctcccgtagctctctctg |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31712534 |
ataacacttccctcattctttcttttcctcccgtagctctctctg |
31712578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 39156577 - 39156533
Alignment:
| Q |
196 |
ataacacttccctcattctttctcttcctcccgtagctctctctg |
240 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39156577 |
ataacacttccctcattctttcttttcctcccgtagctctctctg |
39156533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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