View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_high_23 (Length: 245)

Name: NF8385_high_23
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_high_23
NF8385_high_23
[»] chr4 (3 HSPs)
chr4 (1-82)||(11101222-11101303)
chr4 (181-245)||(11101047-11101111)
chr4 (208-245)||(5902351-5902388)
[»] chr1 (1 HSPs)
chr1 (186-245)||(23549548-23549607)
[»] chr8 (2 HSPs)
chr8 (191-245)||(17878950-17879004)
chr8 (175-237)||(17687198-17687259)
[»] chr6 (4 HSPs)
chr6 (191-245)||(31720415-31720469)
chr6 (191-237)||(24471242-24471288)
chr6 (191-245)||(13242502-13242556)
chr6 (191-232)||(25777479-25777520)
[»] scaffold0340 (1 HSPs)
scaffold0340 (191-245)||(17270-17324)
[»] chr3 (1 HSPs)
chr3 (191-245)||(12412435-12412489)
[»] chr2 (4 HSPs)
chr2 (191-241)||(14866584-14866634)
chr2 (175-244)||(27747276-27747343)
chr2 (191-229)||(22682672-22682711)
chr2 (191-245)||(16735790-16735844)
[»] chr7 (3 HSPs)
chr7 (181-238)||(16812256-16812313)
chr7 (191-236)||(23125186-23125231)
chr7 (178-234)||(19416451-19416507)
[»] scaffold0606 (1 HSPs)
scaffold0606 (193-245)||(4840-4892)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 11101303 - 11101222
Alignment:
Q  1 tcgttatcaatagaatttatgtctgtgtttgttttgggttatgtttgaacatctatgtgatcatcaagttggttgtataatc 82  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11101303 tcgttatcaatagaatttatgtctgtatttgttttgggttatgtttgaacatctatgtgatcatcaagttggttatataatc 11101222  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 245
Target Start/End: Complemental strand, 11101111 - 11101047
Alignment:
Q  181 aaggagaagctgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||| |||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  11101111 aaggaggagcttaattgtgttaactttttcttgtttttaataaagtccaaagttcagcttctgat 11101047  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 5902388 - 5902351
Alignment:
Q  208 ttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5902388 ttcttctttttaacaaagtccaaagttcagcttctgat 5902351  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 23549548 - 23549607
Alignment:
Q  186 gaagctgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||| ||||||||||||  |||||||| |||||||| |||||||||||||||||||||||    
T  23549548 gaagttgaattgtgttagttttttcttctttttaactaagtccaaagttcagcttctgat 23549607  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 17878950 - 17879004
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||||||||||||||||||| |||| ||||||||  |||||||||||||||||    
T  17878950 tgaattgtgttaactttttcttcttttaaacaaagtttaaagttcagcttctgat 17879004  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 17687198 - 17687259
Alignment:
Q  175 cacaagaaggagaagctgaattgtgttaactttttcttatttttaacaaagtccaaagttcag 237  Q
    |||||||||| || |||||||||||||| |||||||||||||||||  | ||||| |||||||    
T  17687198 cacaagaagggga-gctgaattgtgttagctttttcttatttttaagtatgtccagagttcag 17687259  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 31720469 - 31720415
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||    
T  31720469 tgaattgtgttaactttttcttctttttaaccaagtccaaagttcaacttttgat 31720415  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 237
Target Start/End: Complemental strand, 24471288 - 24471242
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcag 237  Q
    |||||||||||||||||||||| |||||||| |||| ||||||||||    
T  24471288 tgaattgtgttaactttttcttctttttaactaagttcaaagttcag 24471242  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 13242502 - 13242556
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||| ||||||||||||||||| |||| ||  |||||||| ||||||||||||||    
T  13242502 tgaactgtgttaactttttcttgttttaaattaagtccaatgttcagcttctgat 13242556  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 25777520 - 25777479
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaag 232  Q
    ||||||||||||  |||||||||||||||||||| |||||||    
T  25777520 tgaattgtgttagatttttcttatttttaacaaactccaaag 25777479  T

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Target: scaffold0340 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 245
Target Start/End: Original strand, 17270 - 17324
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||||||||| ||||||||| | || ||| |||||||||||||||||||||||    
T  17270 tgaattgtgttagctttttcttgtcttaaactaagtccaaagttcagcttctgat 17324  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 12412489 - 12412435
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||||||||| ||||||||||| |||||| ||||||||||| || ||||||||    
T  12412489 tgaattgtgttagctttttcttatatttaactaagtccaaagtccaacttctgat 12412435  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 14866584 - 14866634
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttc 241  Q
    ||||||||||||  |||||||| |||||||| |||||||||||||||||||    
T  14866584 tgaattgtgttagttttttcttctttttaactaagtccaaagttcagcttc 14866634  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 244
Target Start/End: Complemental strand, 27747343 - 27747276
Alignment:
Q  175 cacaagaaggagaagctgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctga 244  Q
    ||||||||||||  | ||||||||||||| |||||||| |||||||| |||||||| |||||| ||||||    
T  27747343 cacaagaaggag--gttgaattgtgttaaatttttcttgtttttaaccaagtccaatgttcagattctga 27747276  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 229
Target Start/End: Original strand, 22682672 - 22682711
Alignment:
Q  191 tgaattgtgttaactttttcttattttt-aacaaagtcca 229  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  22682672 tgaattgtgttaactttttcttatttttaaacaaagtcca 22682711  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 16735844 - 16735790
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    ||||||||||||  |||||||| |||||||| |||| |||| |||||||||||||    
T  16735844 tgaattgtgttagttttttcttctttttaactaagttcaaatttcagcttctgat 16735790  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 16812256 - 16812313
Alignment:
Q  181 aaggagaagctgaattgtgttaactttttcttatttttaacaaagtccaaagttcagc 238  Q
    ||||||| | |||||||||||| ||||||||| |||||||| |||| |||||||||||    
T  16812256 aaggagaggttgaattgtgttagctttttcttctttttaactaagttcaaagttcagc 16812313  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 23125186 - 23125231
Alignment:
Q  191 tgaattgtgttaactttttcttatttttaacaaagtccaaagttca 236  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||||||    
T  23125186 tgaattgtgttagctttttcttcttttaaactaagtccaaagttca 23125231  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 234
Target Start/End: Original strand, 19416451 - 19416507
Alignment:
Q  178 aagaaggagaagctgaattgtgttaactttttcttatttttaacaaagtccaaagtt 234  Q
    ||||||| || | |||||||||||| ||||||||| |||||||  ||||||||||||    
T  19416451 aagaaggggaggatgaattgtgttagctttttcttctttttaaataagtccaaagtt 19416507  T

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Target: scaffold0606 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 4840 - 4892
Alignment:
Q  193 aattgtgttaactttttcttatttttaacaaagtccaaagttcagcttctgat 245  Q
    |||||||||||||||||||  |||||||| | |||||| ||||||||||||||    
T  4840 aattgtgttaactttttctcgtttttaactaggtccaatgttcagcttctgat 4892  T

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