View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_high_27 (Length: 218)

Name: NF8385_high_27
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_high_27
NF8385_high_27
[»] chr3 (39 HSPs)
chr3 (18-195)||(10431053-10431230)
chr3 (18-195)||(10034883-10035060)
chr3 (18-195)||(10520365-10520542)
chr3 (18-193)||(10129802-10129977)
chr3 (18-191)||(10263581-10263754)
chr3 (18-193)||(9980346-9980521)
chr3 (18-195)||(9841738-9841915)
chr3 (18-191)||(10583393-10583566)
chr3 (18-195)||(11778994-11779171)
chr3 (18-195)||(11772114-11772291)
chr3 (18-195)||(10360813-10360990)
chr3 (93-195)||(9852832-9852934)
chr3 (18-140)||(10503462-10503584)
chr3 (18-145)||(9852619-9852746)
chr3 (100-195)||(10666497-10666592)
chr3 (16-134)||(10091666-10091784)
chr3 (16-134)||(10198548-10198666)
chr3 (18-193)||(10086056-10086230)
chr3 (18-193)||(10192976-10193150)
chr3 (18-133)||(10372916-10373031)
chr3 (93-191)||(10531736-10531834)
chr3 (93-191)||(10680534-10680632)
chr3 (19-191)||(10666347-10666519)
chr3 (93-191)||(10091950-10092048)
chr3 (93-191)||(10198832-10198930)
chr3 (100-195)||(10583544-10583639)
chr3 (83-178)||(10091871-10091966)
chr3 (83-178)||(10198753-10198848)
chr3 (153-191)||(10372927-10372965)
chr3 (18-87)||(13852563-13852632)
chr3 (21-70)||(10531664-10531713)
chr3 (93-131)||(10091812-10091850)
chr3 (93-131)||(10198694-10198732)
chr3 (28-70)||(10680469-10680511)
chr3 (32-66)||(10892212-10892246)
chr3 (32-66)||(11128158-11128192)
chr3 (32-66)||(11157149-11157183)
chr3 (30-66)||(8864190-8864226)
chr3 (153-193)||(10503666-10503706)
[»] scaffold0083 (1 HSPs)
scaffold0083 (18-193)||(54616-54791)
[»] chr2 (1 HSPs)
chr2 (18-195)||(26909768-26909945)
[»] chr8 (2 HSPs)
chr8 (18-190)||(44954677-44954849)
chr8 (18-145)||(11487909-11488036)
[»] chr4 (1 HSPs)
chr4 (19-191)||(17849939-17850111)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10431230 - 10431053
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10431230 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaactctctgtttttggttttgtgatcaacttgagacattgccagaaaactgcc 10431131  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    |||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10431130 tcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 10431053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 10034883 - 10035060
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10034883 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaaactctctgtttttggaattgtcatcaacttgagacattgccagaaaactgcc 10034982  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    |||||||||||||||||| ||||  ||||||| | ||| |||||||||||||||||||||||||||||||| ||||||    
T  10034983 tcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgact 10035060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 10520365 - 10520542
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||  |||| |||||||| ||||| | ||||||||||||||||||||||||||||    
T  10520365 atgaagtcctttgatggaaaagggcttcgtcacctctcctctctccaacgtctccgtttttgggattgtgaacaacttgagacattgccagaaaactgcc 10520464  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  10520465 tcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgact 10520542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 10129802 - 10129977
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  10129802 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaacatctcttcttttggaattgtcatcaacttgagacattgccagaaaactgcc 10129901  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    |||||||||||||||||| |||| | || ||| | ||||||||||| |||||||||||||||||||||||||||||    
T  10129902 tcccttcctcgctgaaatcacttgacttttgggattgtgaaaagctagagtcattaccagaagacagcctccctga 10129977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 10263581 - 10263754
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  10263581 atgaagtcctttgatggaaatgggcttcaacacctctcctctctccaatatctctgttttttcttttgtcatcaacttgagacattgccagaaaactgcc 10263680  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||||||||||||||| ||||| ||||     |||||||||||| |||||||||||||||||||||||||||    
T  10263681 tcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctccct 10263754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 9980346 - 9980521
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  9980346 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 9980445  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| |||||||||||||||||||||||||||||    
T  9980446 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctga 9980521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 9841738 - 9841915
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| || |||||  || |||||| ||||||||||||||||||    
T  9841738 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaatatctcgatttttcgttttgtccacagcttgagtcattgccagaaaactgcc 9841837  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    |||||||||||||||||| ||||  |||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  9841838 tcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 9841915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 10583393 - 10583566
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    |||||||||||||||||||||||||||||||||||    
T  10583393 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaatatctctgttttttcatttgtcatcaacttgagacattgccagaaaactgcc 10583492  T
Q  118 tcccttcctcgctgaaattac-ttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||||||| ||||||| || |||| || ||| | ||||||||||||| |||||||||||||||||||||||||    
T  10583493 tcccttcctcactgaaatcactttcatttatgg-attgtgaaaagcttgggtcattaccagaagacagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 11779171 - 11778994
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11779171 atgaagtccttcgatggaaatgggcttcgacacctctcctctctcgaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11779072  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| ||||    
T  11779071 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgact 11778994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 11772114 - 11772291
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11772114 atgaagtcttttgatggaaatgggcttcgacacctctcctctctccaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11772213  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| ||||    
T  11772214 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgact 11772291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10360990 - 10360813
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctc-tgtttttggtattgtcatcaacttgagacattgccagaaaactgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| | | ||||  || |||||| |||| ||||||||||||    
T  10360990 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctcgtattttttg-aatgtcgacagcttgagtcattaccagaaaactgc 10360892  T
Q  117 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    ||||||||||||||||||| ||||  ||| |     |||||||||||| | ||||||||||||||||||||||||||||    
T  10360891 ctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgact 10360813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 9852832 - 9852934
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 192  Q
    |||||| |||| ||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9852832 cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg 9852931  T
Q  193 act 195  Q
    |||    
T  9852932 act 9852934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 10503462 - 10503584
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggt-attgtcatcaacttgagacattgccagaaaactgc 116  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||  | ||||||  || |||||| |||||||||||||||||    
T  10503462 atgaagtcctttgatggaaatgggcttcgacaaatctcctctctcgaaaatct-tgaatttcttaattgtctacagcttgagtcattgccagaaaactgc 10503560  T
Q  117 ctcccttcctcgctgaaattactt 140  Q
    ||||||||||||||||||||||||    
T  10503561 ctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 9852619 - 9852746
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||  |  |||||| || |||| | |||||||||||||||||     
T  9852619 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaatatctctattttgcgggttgtcaacagcttgggtcattgccagaaaactgct 9852718  T
Q  118 tcccttcctcgctgaaattacttcaatt 145  Q
    |||||||||| ||||||| |||| ||||    
T  9852719 tcccttcctcactgaaatcacttaaatt 9852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 10666497 - 10666592
Alignment:
Q  100 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    |||| |||||| || ||||||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||    
T  10666497 cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 10666592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 10091666 - 10091784
Alignment:
Q  16 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10091666 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10091765  T
Q  116 cctcccttcctcgctgaaa 134  Q
    |||||||||||||||||||    
T  10091766 cctcccttcctcgctgaaa 10091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 10198548 - 10198666
Alignment:
Q  16 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10198548 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10198647  T
Q  116 cctcccttcctcgctgaaa 134  Q
    |||||||||||||||||||    
T  10198648 cctcccttcctcgctgaaa 10198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 10086056 - 10086230
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10086056 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcg-aaatcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10086154  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| ||||||||||    
T  10086155 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctga 10086230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 10192976 - 10193150
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||| ||||||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10192976 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcg-aaatcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10193074  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| ||||||||||    
T  10193075 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctga 10193150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 10373031 - 10372916
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||   ||||| |  | |||||| |||| |||||| || |||    
T  10373031 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcaaaaatctctatttttttaattgtgaaaagcttgagtcattaccagaagacagcc 10372932  T
Q  118 tcccttcctcgctgaa 133  Q
    |||||||||| |||||    
T  10372931 tcccttcctctctgaa 10372916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10531736 - 10531834
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||||||| | ||  |||| ||  ||||||||||||||||||||||||||||||    
T  10531736 cttgagtcattgccagaaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctccct 10531834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10680534 - 10680632
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | ||  |||| ||  |||||||  |||||||||||||||||||||    
T  10680534 cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccct 10680632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 10666347 - 10666519
Alignment:
Q  19 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttg-gtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||  ||| ||  |||| ||||||||| || || ||| |||| |||||||||| ||    
T  10666347 tgaagtcctttaatggaaatgggcttctacacctctcctctctcaaacgtct-tgaatttgagtattgtcaacagctggagtcattaccagaaaactacc 10666445  T
Q  118 tcccttcctcgctgaaattactt-caatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    ||||||| || ||||||  |||| ||||| |||  | ||| |  ||||| ||||||||||||||||||||||||||    
T  10666446 tcccttcatctctgaaagaacttacaattcgtg--attgtaagcagcttaagtcattaccagaagacagcctccct 10666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10091950 - 10092048
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||    
T  10091950 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccct 10092048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10198832 - 10198930
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||    
T  10198832 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccct 10198930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 10583544 - 10583639
Alignment:
Q  100 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| ||||   |||| ||  || |||||||||||||||||||||||||||||||    
T  10583544 cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggt-tgtgtaagactcgagtcattaccagaagacagcctccctgact 10583639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 10091871 - 10091966
Alignment:
Q  83 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 178  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10091871 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10091966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 10198753 - 10198848
Alignment:
Q  83 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 178  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10198753 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10198848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 191
Target Start/End: Complemental strand, 10372965 - 10372927
Alignment:
Q  153 tgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10372965 tgtgaaaagcttgagtcattaccagaagacagcctccct 10372927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 13852632 - 13852563
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtc 87  Q
    |||||||| || |||||||||||||||||||| |||||||||||| | |||||| | |||||| ||||||    
T  13852632 atgaagtctttcgatggaaatgggcttcgacatctctcctctctcaacaatctcggattttggaattgtc 13852563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 10531664 - 10531713
Alignment:
Q  21 aagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatct 70  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| |||||||    
T  10531664 aagtcatttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10531713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctg 131  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10091812 cttgagtcattgccagaaaactgtctcccttcctcgctg 10091850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctg 131  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10198694 cttgagtcattgccagaaaactgtctcccttcctcgctg 10198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 10680469 - 10680511
Alignment:
Q  28 ttgatggaaatgggcttcgacacctctcctctctcgaaaatct 70  Q
    |||| |||||||| ||||||||||||||||||||| |||||||    
T  10680469 ttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 10892212 - 10892246
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  10892212 tggaaatgggcttcgacacctctcctctctggaaa 10892246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 11128192 - 11128158
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  11128192 tggaaatgggcttcgacacctctcctctcttgaaa 11128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 11157183 - 11157149
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  11157183 tggaaatgggcttcgacacctctcctctctggaaa 11157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 8864190 - 8864226
Alignment:
Q  30 gatggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  8864190 gatggaaatgggcttcgatacctctcctctctggaaa 8864226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 193
Target Start/End: Original strand, 10503666 - 10503706
Alignment:
Q  153 tgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    |||||||||||| | |||||||||||||||||||| |||||    
T  10503666 tgtgaaaagctttactcattaccagaagacagccttcctga 10503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 54791 - 54616
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  54791 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 54692  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctga 193  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| |||||||||||||||||||||||||||||    
T  54691 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctga 54616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 195
Target Start/End: Original strand, 26909768 - 26909945
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||    ||||| | |||||  || |||| |||||||||||||    
T  26909768 atgaagtcctttgatggaaatgggcttcgacgcctctcctctctccaaaatcttcactttattaattgtgaacaactcaagtcatttccagaaaactgcc 26909867  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgact 195  Q
    ||||||||||||||||||  |||||||| |     ||||| || ||||||||||||||||||||||||||||| ||||    
T  26909868 tcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgact 26909945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 44954849 - 44954677
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacct-ctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgc 116  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||||||||||   ||| |  | ||||| || |||||| |||| |||||||||||     
T  44954849 atgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatctccactttcgtaactgtcaacagcttgagtcatttccagaaaactgt 44954750  T
Q  117 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccc 190  Q
    || |||||||||||||||| ||||||||| | |   |||||| | |||||||| ||||||||||| ||||||||    
T  44954749 cttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccc 44954677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 11487909 - 11488036
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||| || |||| |  ||||||| | || | ||  ||||| |||| |||||||||| ||    
T  11487909 atgaagccctatgatggaagtgggcttcgatacctctcctctctcaaagatctttcattttggtgtagtgaacactttgagtcattaccagaaaacttcc 11488008  T
Q  118 tcccttcctcgctgaaattacttcaatt 145  Q
    |||| |||||||||| || |||| ||||    
T  11488009 tcccatcctcgctgatatcacttaaatt 11488036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 17850111 - 17849939
Alignment:
Q  19 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtat-tgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||| ||||||||||||||||| |||||||| || |||||||| |||| ||| ||  |||  ||  ||||| ||||||||| |||||||| |||||||||    
T  17850111 tgaactcctttgatggaaatggacttcgacatctttcctctcttgaaagtct-tgactttcttaactgtcaacaacttgagtcattgccacaaaactgcc 17850013  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||||||| |||||||  ||| |||| ||  | ||| |||  |||||||| |||||||||||||||||||||    
T  17850012 tcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctccct 17849939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University