View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_high_28 (Length: 216)
Name: NF8385_high_28
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 7935308 - 7935219
Alignment:
| Q |
4 |
acgttcttttactccattcctcaaatttacatccac--gaaaccatggcttcttgtgcacactaacacacagtgacaacgtttgacagat |
91 |
Q |
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| T |
7935308 |
acgttcttttactccattcctcaaatttacatccacacgaaaccatggcttcttgtacacactaacacacagtgacaacgtttgacagat |
7935219 |
T |
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Target: chr8; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 83 - 142
Target Start/End: Complemental strand, 7932802 - 7932743
Alignment:
| Q |
83 |
ttgacagatagacagtgggaccatggtagtcaagtactttggggtaaccttagctaccac |
142 |
Q |
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| T |
7932802 |
ttgacagatagacagtgggaccatggtagtcaagtactttggggtaaccttagctaccac |
7932743 |
T |
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