View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_high_5 (Length: 508)
Name: NF8385_high_5
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 25535740 - 25535248
Alignment:
| Q |
1 |
agtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgattt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535740 |
agtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgattt |
25535641 |
T |
|
| Q |
101 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25535640 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcttattgtgatgagggccgcattgacgcggct |
25535541 |
T |
|
| Q |
201 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25535540 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
25535441 |
T |
|
| Q |
301 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaatgt |
400 |
Q |
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| T |
25535440 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaatgt |
25535341 |
T |
|
| Q |
401 |
tgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttt |
493 |
Q |
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| T |
25535340 |
tgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttt |
25535248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 25514701 - 25515185
Alignment:
| Q |
1 |
agtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgattt |
100 |
Q |
| |
|
||||| ||||||||||||| |||||||| || |||||||||||||| || ||||| | ||| |||| || || |||||| |||| ||||||||||||| |
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| T |
25514701 |
agtcggcgttctcagcaacgactcgtccgacggtgttcacctgcaacgccatcatcggtgccatgctccacgcaaaaagacacaaccaagctcttgattt |
25514800 |
T |
|
| Q |
101 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
200 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514801 |
gtacgagttcttctttaacttgtttaaaattgttcctaacattgtctctcataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
25514900 |
T |
|
| Q |
201 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||| ||||||||||||||||||||||| |
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| T |
25514901 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcaccggttacctatcagattatcaccaaagctttgatcagtgctggtcgtattg |
25515000 |
T |
|
| Q |
301 |
aggatgcccgtgacatcttggttaagatgttatacacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaac------tggg |
394 |
Q |
| |
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| |||||||||||||||||| |||||||||||| ||||||||||| |||||| |||||| || ||| || ||||||||||| |||||| ||| |
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| T |
25515001 |
aagatgcccgtgacatcttgtttaagatgttatccacgggccatgtggatttaactgtg--tgacaatctcttatctgcttgtcttcaactgacagtggt |
25515098 |
T |
|
| Q |
395 |
aaatgttgataaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatat |
481 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| |
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| T |
25515099 |
aaattttgataaggctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatat |
25515185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 25527711 - 25527274
Alignment:
| Q |
1 |
agtcgacgttctcagcaacaactcgtccaactgtgttcacctgcaatgctatcattgctgcaatgcaccgtgcgaaaagatacaatgaagctcttgattt |
100 |
Q |
| |
|
||||| ||||||||||||| | |||||| || |||||||||||||| || ||||| | ||| |||||||| || |||||| |||| |||||||||||||| |
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|
| T |
25527711 |
agtcggcgttctcagcaacgaatcgtccgacggtgttcacctgcaacgccatcatcggtgccatgcaccgcgcaaaaagacacaacgaagctcttgattt |
25527612 |
T |
|
| Q |
101 |
gtacgagttcttctttaacctctttaaaattgctcctaacattgtctcttataactttgttatcaatgcctattgtgatgagggccgcattgacgcggct |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| | ||||| || ||||||||||||||| ||||||| ||||| |
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| T |
25527611 |
gtacgagttcttctttaactcgtttaaaattactcctaacattgtctcttataactttatgatcaacgcatattgtgatgagggctgcattgatgcggcc |
25527512 |
T |
|
| Q |
201 |
ctcgatgtttttcggaaaatgaaggccgatgcatctatcaaaccctcacccgttacttaccgcattatcaccaaatgtttgatcagtgctggtcgtattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || | ||||||||||||||| |||||| |||||||||||||| |
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|
| T |
25527511 |
ctcgatgtttttcggaaaatgaaggctgatgcatctatcaaaccctcactggttacctatcagattatcaccaaatgtatgatcaatgctggtcgtattg |
25527412 |
T |
|
| Q |
301 |
aggatgcccgtgacatcttggttaagatgttat---acacgggccatgcggatttcactgtgtatgctaatatcatatctgcttgtattcaactgggaaa |
397 |
Q |
| |
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|||| ||| ||||||| | | || ||||||||| || |||| ||| | |||| | | |||||| |||| | | || |||||| |||||||||||| |
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|
| T |
25527411 |
aggacgccagtgacatttggtttgagatgttattagactcgggtcataccgattcctcggtgtataataatctgacattggcttgttctcaactgggaaa |
25527312 |
T |
|
| Q |
398 |
tgttgataaagctaatgagcttattgatgagcttaaga |
435 |
Q |
| |
|
| | ||||| ||||||||| |||||||||||||||||| |
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|
| T |
25527311 |
tttggataaggctaatgagtttattgatgagcttaaga |
25527274 |
T |
|
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