View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_high_6 (Length: 457)
Name: NF8385_high_6
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 33 - 439
Target Start/End: Complemental strand, 41976002 - 41975595
Alignment:
| Q |
33 |
gtaatcacaatagtgagcgagttctattgtagaatgtattgtcaaagctttttgattcatttatacccaagtaaagcatgataaa-gaaaattgtgtata |
131 |
Q |
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| T |
41976002 |
gtaatcacaatagtgagcgatttctattgtagaatgtattgtcaaagcttttcgattcatttatacccaagtaaagcatgataaaagaaaattgtgtata |
41975903 |
T |
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| Q |
132 |
tttgattgcaagcttttgatgtgtatgagttaatgttttggcatttgtaagttcagtctgttgcattgtcttgatctttgtagtgagagcgtcagtaata |
231 |
Q |
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| T |
41975902 |
tttgattgcaagcttttgatgtgtatgagttaatgttttggcctttgtaagttcagtctgttgcattgtcttgatctttgtagtgagaacgtcggtaata |
41975803 |
T |
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| Q |
232 |
gcaaaggctttatactatatggtttcataggttgcgccgtattactacaactgtgttacaagttagagagctattcctgccttaattacttgtctattta |
331 |
Q |
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| T |
41975802 |
gcaaaggctttatactatatggtttcataggttgcgccgtattactacaactgtgttacaagttagagagctattcctgcctttattacttgtctattta |
41975703 |
T |
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| Q |
332 |
tcgcactagttccttgatgctattgagataaatcgttatttgcaattttgaaaattctctagctaattctcgtagattgnnnnnnncattgaaattctcg |
431 |
Q |
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| T |
41975702 |
tcgcactagttccttgatgctattgagataaattgttatttgcaattttgaaaattctctagctaattctcgtagattgtttttttcattgaaattctcg |
41975603 |
T |
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| Q |
432 |
tagattat |
439 |
Q |
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| T |
41975602 |
ttgattat |
41975595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 41976099 - 41976034
Alignment:
| Q |
10 |
gagtttggtgttccgtttttcaggtaatcacaatagtgagcgagttctattgtagaatgtattgtc |
75 |
Q |
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| T |
41976099 |
gagtttagtgtttggtttttcaggtaatcacaatagtgagcgagttctattgtacaatgtattgtc |
41976034 |
T |
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