View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_high_9 (Length: 388)
Name: NF8385_high_9
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 30350177 - 30350392
Alignment:
| Q |
19 |
ctaaggttcttgcctcatgttaagtgcatgatttgatgacaaaaagtaaatgtcatacattaggtgagtttgatcaatttagaaatttccaatatggtat |
118 |
Q |
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| T |
30350177 |
ctaaggttcttgcctcatgttaagtgcatgatttgatgacaaaaagtaaatgtcatacattaggtgagtttgatcaatttagaaatttccaatatggtat |
30350276 |
T |
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| Q |
119 |
atatgaaaggtaagagaaaaattggttttcttagttcaattcttagtgatagtgaactacatgtggttgttgtaaatgtagtggaccttgtatcttgact |
218 |
Q |
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| T |
30350277 |
atatgaaaggtaagagaaaaattggttttcttagttcaattcttagtgatagtgaactacatgtggttgttgtaaatgtagtggaccttgtatcttgact |
30350376 |
T |
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| Q |
219 |
ctttcaatttgggggg |
234 |
Q |
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| T |
30350377 |
ctttcaattcgggggg |
30350392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 229 - 380
Target Start/End: Original strand, 30350412 - 30350563
Alignment:
| Q |
229 |
ggggggtgtagaaataagttcaattttgcagcagtttctggagagtttagtgagaaaatctcatcttttgtagataggttaagtttttataactatgttc |
328 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30350412 |
ggggggggtagaaataagttcaattttgcagcagtttctggagagtttagtgagaaaatctcatcttttgtagataggttaagtttttataactatgttc |
30350511 |
T |
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| Q |
329 |
catacaccactagcttgtatggcactatattgggttccttattctctctgct |
380 |
Q |
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| T |
30350512 |
catacaccactagcttgtatggcactatattgggttccttattctctatgct |
30350563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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