View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_1 (Length: 847)
Name: NF8385_low_1
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 1 - 834
Target Start/End: Complemental strand, 48483563 - 48482731
Alignment:
| Q |
1 |
aagtttcctttggcatatgtttgaagtcctagcattgtcaacttaccatttaaatggcccctttccccttttaatttttatgctgcggttgtatttgttt |
100 |
Q |
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| T |
48483563 |
aagttgcctttggcttatgtttgaagtcctagcattgtcaacttaccatttaaatggcccctttccccttttaatttttatgctgcggttgtattttttt |
48483464 |
T |
|
| Q |
101 |
atccattgctaatttgtttttataatatggggaaactctttgcaggtggtgcactgaagccaactgatgttgagttgctgtgggttcatgtaacatgcgc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48483463 |
atccattgctaagttgtttttataatatggggaaactctttgcaggtggtgcactgaagccaactgatgttgagttgctgtgggttcatgtaacatgcgc |
48483364 |
T |
|
| Q |
201 |
ttggttccggcctgaagttgttttccgaaaccatgaggcaatggaacctgcctctggaatccttaagattcctcctagttcctttttgaaggtaaaccat |
300 |
Q |
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| T |
48483363 |
ttggttccggcctgaagttgttttccgaaaccacgaggcaatggaacctgcctctggaatccttaagattcctcctagttcctttttgaaggtaaaccat |
48483264 |
T |
|
| Q |
301 |
aggggctaaggttttcttgacagtttgttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgcttgtt |
400 |
Q |
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| T |
48483263 |
aggggctaaggttttcttgacag-ttgttgtcaggtgattttagctactagcctgcaatattcttgtagcagtagctaggaactaatttgcatgcttgtt |
48483165 |
T |
|
| Q |
401 |
ttgataactaaatgaattctgtcagggggtataaaaaatgacaattatacaatataannnnnnnnnnnnngtcattccattccccaacgttatttcatta |
500 |
Q |
| |
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| T |
48483164 |
ttgataactaaatgaattctgtcggggggtataaaaaatgacaatcatacaatataatttttttatttttgtcattccattccccaacgttatttcatta |
48483065 |
T |
|
| Q |
501 |
cccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcatttttcctatctttcttg |
600 |
Q |
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| T |
48483064 |
cccaatatgacttatacaaaacactttttactcaagttattggggtccttttctagttgtgttacacttttactcacattcattttttctatctttcttg |
48482965 |
T |
|
| Q |
601 |
tccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatca |
700 |
Q |
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| T |
48482964 |
tccgcgttggtgccagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatca |
48482865 |
T |
|
| Q |
701 |
aggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgctcn |
800 |
Q |
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| T |
48482864 |
aggatgggatatagcatggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgctct |
48482765 |
T |
|
| Q |
801 |
nnnnnnggagggcagcaaagtcattgatgtccat |
834 |
Q |
| |
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||||||||||||||||||| |||||||| |
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| T |
48482764 |
ttttttggagggcagcaaagtcatttatgtccat |
48482731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 139 - 293
Target Start/End: Original strand, 10036763 - 10036917
Alignment:
| Q |
139 |
tttgcaggtggtgcactgaagccaactgatgttgagttgctgtgggttcatgtaacatgcgcttggttccggcctgaagttgttttccgaaaccatgagg |
238 |
Q |
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|||||||||||||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||| | | ||||||||||||| ||||| ||||| |
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| T |
10036763 |
tttgcaggtggtgctctgaagccaactgatgtcgagatgttgtgggttcatgtaacatgcgcttggtttcaacgtgaagttgttttcaaaaaccctgagg |
10036862 |
T |
|
| Q |
239 |
caatggaacctgcctctggaatccttaagattcctcctagttcctttttgaaggt |
293 |
Q |
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| T |
10036863 |
tcatggaacctgccctcggaattcttagaattcctcctaattcctttgtgaaggt |
10036917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 614 - 702
Target Start/End: Original strand, 10037573 - 10037661
Alignment:
| Q |
614 |
cagacttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
702 |
Q |
| |
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| T |
10037573 |
cagacctgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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