View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_10 (Length: 433)

Name: NF8385_low_10
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_10
NF8385_low_10
[»] chr6 (19 HSPs)
chr6 (12-420)||(33169375-33169783)
chr6 (120-259)||(15950829-15950969)
chr6 (131-259)||(21698739-21698867)
chr6 (117-259)||(1638165-1638306)
chr6 (136-259)||(1641212-1641334)
chr6 (124-259)||(11986244-11986379)
chr6 (126-255)||(15923492-15923621)
chr6 (131-259)||(30063575-30063703)
chr6 (120-259)||(7090322-7090458)
chr6 (127-224)||(10516218-10516315)
chr6 (257-363)||(10516043-10516149)
chr6 (260-337)||(30063740-30063817)
chr6 (120-172)||(2015343-2015395)
chr6 (135-203)||(6047407-6047475)
chr6 (299-341)||(21698621-21698663)
chr6 (265-341)||(11986126-11986202)
chr6 (132-192)||(13434449-13434508)
chr6 (12-51)||(33140022-33140061)
chr6 (55-91)||(33153995-33154031)
[»] chr8 (13 HSPs)
chr8 (132-253)||(7995220-7995341)
chr8 (143-255)||(12784017-12784130)
chr8 (263-378)||(7995059-7995174)
chr8 (132-252)||(3989558-3989680)
chr8 (136-259)||(28161871-28161994)
chr8 (136-259)||(25732254-25732377)
chr8 (261-363)||(12784170-12784271)
chr8 (127-228)||(13880530-13880631)
chr8 (274-363)||(28162045-28162134)
chr8 (128-187)||(12247155-12247214)
chr8 (274-363)||(25732428-25732517)
chr8 (258-363)||(3989411-3989516)
chr8 (135-259)||(39533730-39533854)
[»] chr7 (23 HSPs)
chr7 (124-259)||(21588053-21588188)
chr7 (120-259)||(664885-665027)
chr7 (123-256)||(7097321-7097454)
chr7 (133-259)||(29526857-29526983)
chr7 (127-259)||(13783900-13784032)
chr7 (263-378)||(665067-665182)
chr7 (132-259)||(19016938-19017065)
chr7 (127-224)||(19541872-19541969)
chr7 (120-231)||(15455851-15455963)
chr7 (120-259)||(5609408-5609547)
chr7 (131-259)||(5086624-5086752)
chr7 (120-248)||(27243951-27244078)
chr7 (122-248)||(33973124-33973251)
chr7 (261-378)||(21588226-21588343)
chr7 (136-259)||(21824406-21824529)
chr7 (123-198)||(9697274-9697349)
chr7 (258-363)||(5609582-5609687)
chr7 (276-341)||(32535075-32535140)
chr7 (299-363)||(21824266-21824330)
chr7 (278-338)||(13783785-13783845)
chr7 (274-362)||(27244140-27244228)
chr7 (299-363)||(33972973-33973037)
chr7 (169-202)||(9678141-9678174)
[»] chr3 (18 HSPs)
chr3 (136-259)||(26307404-26307527)
chr3 (127-259)||(15790072-15790204)
chr3 (120-259)||(32073504-32073644)
chr3 (138-259)||(8968303-8968424)
chr3 (129-259)||(2439519-2439649)
chr3 (138-259)||(9734367-9734488)
chr3 (127-259)||(2651713-2651845)
chr3 (136-259)||(34935118-34935241)
chr3 (127-259)||(14504025-14504157)
chr3 (274-363)||(2439379-2439468)
chr3 (258-363)||(14504192-14504297)
chr3 (135-253)||(46091971-46092089)
chr3 (274-363)||(34934978-34935067)
chr3 (258-363)||(9734523-9734628)
chr3 (278-338)||(15789957-15790017)
chr3 (303-341)||(2651925-2651963)
chr3 (182-259)||(29704679-29704756)
chr3 (163-199)||(13434401-13434437)
[»] chr5 (21 HSPs)
chr5 (127-259)||(8724739-8724871)
chr5 (127-259)||(13065376-13065508)
chr5 (120-259)||(11619070-11619209)
chr5 (128-248)||(31291732-31291852)
chr5 (127-259)||(42765308-42765440)
chr5 (120-255)||(20706149-20706284)
chr5 (131-259)||(19609065-19609193)
chr5 (138-259)||(20587666-20587787)
chr5 (120-203)||(40384923-40385006)
chr5 (127-259)||(36961880-36962012)
chr5 (257-381)||(11619243-11619367)
chr5 (258-341)||(20587548-20587631)
chr5 (291-341)||(19609261-19609311)
chr5 (258-363)||(18521675-18521779)
chr5 (258-341)||(20706027-20706110)
chr5 (134-245)||(38640006-38640117)
chr5 (258-363)||(31291603-31291708)
chr5 (278-338)||(8724624-8724684)
chr5 (259-338)||(13065544-13065623)
chr5 (314-363)||(36962103-36962152)
chr5 (314-363)||(42765168-42765217)
[»] chr1 (18 HSPs)
chr1 (120-259)||(32108455-32108595)
chr1 (133-259)||(26418699-26418825)
chr1 (120-245)||(44464589-44464714)
chr1 (120-259)||(11420258-11420398)
chr1 (127-256)||(38532611-38532740)
chr1 (132-259)||(21182667-21182792)
chr1 (127-259)||(27527324-27527456)
chr1 (128-259)||(4180000-4180131)
chr1 (144-259)||(11644778-11644893)
chr1 (258-341)||(22161662-22161745)
chr1 (128-259)||(25594732-25594863)
chr1 (137-259)||(22161780-22161902)
chr1 (291-341)||(4179882-4179932)
chr1 (257-335)||(21182555-21182633)
chr1 (298-341)||(11644660-11644703)
chr1 (303-339)||(38532823-38532859)
chr1 (299-341)||(29600919-29600961)
chr1 (217-259)||(29601037-29601079)
[»] chr4 (14 HSPs)
chr4 (133-259)||(47783020-47783146)
chr4 (127-252)||(20088962-20089088)
chr4 (123-259)||(13200869-13201005)
chr4 (132-259)||(4946603-4946730)
chr4 (127-259)||(15065934-15066066)
chr4 (138-259)||(25553278-25553399)
chr4 (152-257)||(40686992-40687097)
chr4 (123-198)||(13563651-13563726)
chr4 (263-378)||(20089135-20089250)
chr4 (165-259)||(17459429-17459523)
chr4 (120-255)||(13905767-13905902)
chr4 (274-363)||(17459289-17459378)
chr4 (258-337)||(40686876-40686955)
chr4 (169-202)||(13543085-13543118)
[»] scaffold0251 (2 HSPs)
scaffold0251 (134-259)||(2149-2274)
scaffold0251 (259-338)||(2310-2389)
[»] scaffold0071 (1 HSPs)
scaffold0071 (124-259)||(52705-52840)
[»] chr2 (13 HSPs)
chr2 (138-259)||(21084914-21085035)
chr2 (120-259)||(7861628-7861767)
chr2 (127-259)||(34071270-34071402)
chr2 (120-256)||(31426481-31426617)
chr2 (127-259)||(27072391-27072523)
chr2 (120-231)||(34819630-34819741)
chr2 (136-259)||(20471205-20471328)
chr2 (258-363)||(21085070-21085175)
chr2 (260-341)||(31426360-31426441)
chr2 (263-378)||(20471050-20471165)
chr2 (266-378)||(34071445-34071556)
chr2 (214-257)||(26370489-26370532)
chr2 (314-363)||(27072251-27072300)
[»] scaffold0007 (1 HSPs)
scaffold0007 (127-259)||(234619-234751)
[»] scaffold0114 (2 HSPs)
scaffold0114 (136-259)||(11447-11570)
scaffold0114 (299-363)||(11646-11710)
[»] scaffold1689 (2 HSPs)
scaffold1689 (136-259)||(942-1065)
scaffold1689 (276-359)||(806-889)
[»] scaffold0009 (1 HSPs)
scaffold0009 (127-211)||(215522-215606)
[»] scaffold0388 (1 HSPs)
scaffold0388 (148-259)||(14381-14492)
[»] scaffold0445 (2 HSPs)
scaffold0445 (136-228)||(13936-14028)
scaffold0445 (299-363)||(14137-14201)


Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 12 - 420
Target Start/End: Complemental strand, 33169783 - 33169375
Alignment:
Q  12 attatgtactcaaaataaaagcataatgaaatctacttattttttgaatttgaaatgcaatagtattgtcatctcctctattgaatgttttattaaatgc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33169783 attatgtactcaaaataaaagcataatgaaatctacttattttttgaatttgaaatgcaatagtattgtcatctcctcaattgaatgttttattaaatgc 33169684  T
Q  112 ggcacttattttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  33169683 ggcacttattttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaattttatcaaagatacgtaaactagtattagat 33169584  T
Q  212 gtggctgccttagctaattcttgtgcaacctcatttgcttgcctcctacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctc 311  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33169583 gtggctgccttagttaattcttgtgcaacctcatttgcttgcctcctacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctc 33169484  T
Q  312 gacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaacgttagcaagttgaagctcaagttgaaataaccgcggcattcttaacta 411  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  33169483 aacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaacgttagcaagttgaagctcaagttgaaataactgtggcattcttaacta 33169384  T
Q  412 tttgttgtc 420  Q
    |||||||||    
T  33169383 tttgttgtc 33169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 15950969 - 15950829
Alignment:
Q  120 ttttagggaaagtaa-cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    |||||||||    
T  15950969 ttttagggaaaataaacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctg 15950870  T
Q  219 ccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  15950869 ccttagctaattcatgagcaacctcatttgcttgcctccta 15950829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 21698867 - 21698739
Alignment:
Q  131 gtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaatt 230  Q
    |||| ||||||||||||||||||||||| |||||||||||||| || ||| |||||||| |   ||||||||||| ||||||||||||||||||||||      
T  21698867 gtaaattatatcatttcattaaaaattagatcagtaatacatgctggaatatcatcaaacacctggaagctagtactagatgtggctgccttagctaaaa 21698768  T
Q  231 cttgtgcaacctcatttgcttgcctccta 259  Q
    | || ||||||||||||||||||||||||    
T  21698767 catgagcaacctcatttgcttgcctccta 21698739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 117 - 259
Target Start/End: Original strand, 1638165 - 1638306
Alignment:
Q  117 ttattttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggc 216  Q
    |||||| ||| ||||||| ||||||||||||||||||||| || ||||||||||||| || ||| |||||| ||||  ||||||||||| ||||||||||    
T  1638165 ttatttgaggaaaagtaaattatatcatttcattaaaaatcaa-tcagtaatacatgctggaatatcatcatagatttggaagctagtactagatgtggc 1638263  T
Q  217 tgccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    || |||||||||    |||||||||||||||||||||||||||    
T  1638264 tgtcttagctaaagtatgtgcaacctcatttgcttgcctccta 1638306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 1641212 - 1641334
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| || ||||||||||||| || ||| |||||| ||||  ||||||||||| |||||||||||| |||||||||    |||    
T  1641212 ttatatcatttcattaaaaatcaa-tcagtaatacatgctggaatatcatcatagatttggaagctagtactagatgtggctgtcttagctaaagtatgt 1641310  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  1641311 gcaacctcatttgcttgcctccta 1641334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 11986379 - 11986244
Alignment:
Q  124 agggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgcctta 223  Q
    ||||||||||| ||||||||||||||||||||| |  || ||||||||||||| ||| ||||||||||   ||||| ||||| |||| ||||||||||||    
T  11986379 agggaaagtaaattatatcatttcattaaaaatcaggtcggtaatacatgttggaatatcatcaaagacctggaagttagtactagacgtggctgcctta 11986280  T
Q  224 gctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||   | ||||||||||| ||| |||||||||||    
T  11986279 gctagagcatgtgcaacctcgtttacttgcctccta 11986244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 255
Target Start/End: Original strand, 15923492 - 15923621
Alignment:
Q  126 ggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagc 225  Q
    ||||| || ||||||||||||||||||| ||||||  ||||||| |||  | | | |||||||||||| ||||||||| ||  ||||||||||| |||||    
T  15923492 ggaaaatagcttatatcatttcattaaatattaaagtagtaatagatgccggagtctcatcaaagatatggaagctagaataggatgtggctgctttagc 15923591  T
Q  226 taattcttgtgcaacctcatttgcttgcct 255  Q
    |||||| || || ||| |||||||||||||    
T  15923592 taattcatgggctaccacatttgcttgcct 15923621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 30063575 - 30063703
Alignment:
Q  131 gtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaatt 230  Q
    |||| ||||||||||||||||||||||| ||  |||||||||| || ||| |||||||| |   ||||| ||||| | ||||||||||  ||||||||      
T  30063575 gtaaattatatcatttcattaaaaattagataggtaatacatgctggaatatcatcaaacacctggaaggtagtactggatgtggctgttttagctaaaa 30063674  T
Q  231 cttgtgcaacctcatttgcttgcctccta 259  Q
    | || ||||||||||||||||||||||||    
T  30063675 catgagcaacctcatttgcttgcctccta 30063703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 7090322 - 7090458
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    ||||||| ||| |||||||||||||||||||||| | |||||||||||||    ||| ||| |||||||||||||||||||||  ||   || ||| |||    
T  7090322 ttttaggaaaactaacttatatcatttcattaaatagtaaatcagtaata---tttggaatctcatcaaagatacggaagctatgatggaatttggttgc 7090418  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||| |||||||| || | | | ||||||||||||||||||    
T  7090419 cttggctaattcatgggaatcttcatttgcttgcctccta 7090458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 10516315 - 10516218
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttag 224  Q
    |||| ||||||||||||||| ||||||||| | ||| |||||| |||||| ||| ||||||||||    |||||||||||||||||||| ||||||||    
T  10516315 gaaaataacttatatcattttattaaaaatcagatcggtaatatatgttggaatatcatcaaagacctagaagctagtattagatgtggttgccttag 10516218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 363
Target Start/End: Complemental strand, 10516149 - 10516043
Alignment:
Q  257 ctacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcga 356  Q
    ||||| |||||||| | ||||||||| ||  || |||| || ||||||||||| |||||||||||||||||||||||||| ||||   |  |||||||||    
T  10516149 ctacataattggatgctactatccataatacaaccaaacttggtgacatctccacgacctttgttgaaataatcagctacactttttgagacaacctcga 10516050  T
Q  357 aatcaac 363  Q
    |||||||    
T  10516049 aatcaac 10516043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 260 - 337
Target Start/End: Original strand, 30063740 - 30063817
Alignment:
Q  260 cagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctact 337  Q
    |||||||||| || ||| |||||||| ||  ||||||| ||||||||||| ||||| |||||||||||||||||||||    
T  30063740 cagaattggacactactgtccatgatagatccaaatttggtgacatctccgcgaccattgttgaaataatcagctact 30063817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 2015343 - 2015395
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacat 172  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| | ||||||    
T  2015343 ttttaaggaaaataacttatatcatttcattaaaaattaaatcaatgatacat 2015395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 135 - 203
Target Start/End: Complemental strand, 6047475 - 6047407
Alignment:
Q  135 cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctag 203  Q
    |||||| ||||||||||  ||| |||| ||| |||||||||| |||||||||||||||| |||||||||    
T  6047475 cttatagcatttcattattaatcaaataagtgatacatgttggaatttcatcaaagatatggaagctag 6047407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 21698663 - 21698621
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    ||||||||||| ||||| |||||||||||||||||||||||||    
T  21698663 gtgacatctccacgaccattgttgaaataatcagctactcttt 21698621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 11986202 - 11986126
Alignment:
Q  265 ttggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    ||||| || ||||||||| |||||| |||| |  ||||||| ||| ||||| ||||||||||||| |||||||||||    
T  11986202 ttggacactactatccataatggaaccaaactcggtgacatttccacgaccattgttgaaataattagctactcttt 11986126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 13434508 - 13434449
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagat 192  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||| | |||||||||||||    
T  13434508 taacttatatcatttcatttcaaattaaat-agtgatacatgttggactttcatcaaagat 13434449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 33140061 - 33140022
Alignment:
Q  12 attatgtactcaaaataaaagcataatgaaatctacttat 51  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  33140061 attatgtattcaaaataaaagtataatgaaatctacttat 33140022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 33154031 - 33153995
Alignment:
Q  55 ttgaatttgaaatgcaatagtattgtcatctcctcta 91  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  33154031 ttgaatttgaaatgcaataatattgtcatctcttcta 33153995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 7995341 - 7995220
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattc 231  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  7995341 taacttatatcattttattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacgaaagctaatattagatgtggctgccttagctaattc 7995242  T
Q  232 ttgtgcaacctcatttgcttgc 253  Q
     |||||||| ||||||| ||||    
T  7995241 atgtgcaacttcatttgtttgc 7995220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 143 - 255
Target Start/End: Original strand, 12784017 - 12784130
Alignment:
Q  143 atttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc-aacc 241  Q
    |||||||||||||||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||||||| | ||||||||||||||| ||||| ||||    
T  12784017 atttcattaaaaattaaatcggtaatacatatgggaatctcatcaaagatacggaagttagtattagatgtagttgccttagctaattcatgtgcaaacc 12784116  T
Q  242 tcatttgcttgcct 255  Q
    ||||||| ||||||    
T  12784117 tcatttgtttgcct 12784130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 7995174 - 7995059
Alignment:
Q  263 aattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaa 362  Q
    |||||||||| ||||||||| |||||| ||||||   |||||||||||||| ||||||||||||||||||||||||||| | || ||||||  |||||||    
T  7995174 aattggatactactatccataatggaaccaaattcgatgacatctcctcgatctttgttgaaataatcagctactcttttcgaatcaacctaaaaatcaa 7995075  T
Q  363 cgttagcaagttgaag 378  Q
    |||| |||||||||||    
T  7995074 cgtttgcaagttgaag 7995059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 132 - 252
Target Start/End: Complemental strand, 3989680 - 3989558
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaa--agatacggaagctagtattagatgtggctgccttagctaat 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||   |||||  ||||||||||| ||| | | ||||||||| |||||| ||||    
T  3989680 taacttatatcatttcattaaaaattaaatcagtaatacatgttggaatcctatcaaagagatacggaaggtaggaattgatgtggctaccttagataat 3989581  T
Q  230 tcttgtgcaacctcatttgcttg 252  Q
    |  || |||||||||||||||||    
T  3989580 ttatgggcaacctcatttgcttg 3989558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 28161871 - 28161994
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||||||||  | |||||||| || ||| ||||||||||   ||||||||||| || ||||||||| |||||||||    |||    
T  28161871 ttatatcatttcattaaaaattaaattggaaatacatgctggaatatcatcaaagacctggaagctagtactacatgtggctgtcttagctaacgtatgt 28161970  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  28161971 gcaacctcatttgcttgcctccta 28161994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 25732254 - 25732377
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| || || | |||||||| || ||| ||||||||||   ||||||||||| || |||||| ||||||||||||  | |||    
T  25732254 ttatatcatttcattaaaaatcaattcggaaatacatgctggaatatcatcaaagacctggaagctagtactacatgtggttgccttagctaaagcatgt 25732353  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    |||||||||||||||| |||||||    
T  25732354 gcaacctcatttgcttacctccta 25732377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 12784170 - 12784271
Alignment:
Q  261 agaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatc 360  Q
    |||||||||||| ||||||||| |||||| | ||||  ||||||||||||||||||||||| ||||||||||||||||||| | || ||||||| ||| |    
T  12784170 agaattggatactactatccataatggaacccaattcggtgacatctcctcgacctttgtt-aaataatcagctactcttttcgaatcaacctcaaaagc 12784268  T
Q  361 aac 363  Q
    |||    
T  12784269 aac 12784271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 228
Target Start/End: Original strand, 13880530 - 13880631
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||| ||| |||||||||||||||||||||||| |||||||||||  ||| ||||| ||||||  |||| ||| ||| | ||||||||||||| ||||||    
T  13880530 gaaaataatttatatcatttcattaaaaattaattcagtaatacaaattggaattttatcaaaagtacgaaagttagaactagatgtggctgctttagct 13880629  T
Q  227 aa 228  Q
    ||    
T  13880630 aa 13880631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 28162045 - 28162134
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||| |||||  |||| |  ||||||||||| |||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  28162045 actatccataatggagccaaactcggtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaac 28162134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 187
Target Start/End: Complemental strand, 12247214 - 12247155
Alignment:
Q  128 aaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatca 187  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||| || || ||||||    
T  12247214 aaagtaacttatatcatttcattaaaatttaaatcagtaataaatgtcgagatctcatca 12247155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Original strand, 25732428 - 25732517
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||| |||||  |||| |  |||| |||||| |||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  25732428 actatccataatggagccaaactcggtgatatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaac 25732517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 3989516 - 3989411
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    |||| |||||||||| ||||||||| ||||||  ||| || |||| |||||| |||| ||| || ||||||||||||||| ||| | || ||| ||| ||    
T  3989516 tacataattggatactactatccataatggaacgaaacttggtgatatctccacgacttttattaaaataatcagctactattttcgaatcaatctcaaa 3989417  T
Q  358 atcaac 363  Q
    ||||||    
T  3989416 atcaac 3989411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 39533854 - 39533730
Alignment:
Q  135 cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttg 234  Q
    |||||| ||||||||||||||| || |||   |||||||| |  |  |||||||| ||||||||||||||    || |||| |||||| |||||||| ||    
T  39533854 cttataacatttcattaaaaatcaagtcatggatacatgtcggtacatcatcaaaaatacggaagctagtcaaggaagtggatgcctttgctaattcgtg 39533755  T
Q  235 tgcaacctcatttgcttgcctccta 259  Q
     |||||| |||| ||||||||||||    
T  39533754 ggcaaccacattcgcttgcctccta 39533730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 6e-47; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 124 - 259
Target Start/End: Original strand, 21588053 - 21588188
Alignment:
Q  124 agggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgcctta 223  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||  ||||||||| ||||||||||||| |||    
T  21588053 agggaaagtaacttatatcatttcattaaaaattaaatcaggaatatatattggaatttcatcaaagatacaaaagctagtactagatgtggctgcgtta 21588152  T
Q  224 gctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    |||||||| |||||||||||||||| ||||||||||    
T  21588153 gctaattcatgtgcaacctcatttgattgcctccta 21588188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 664885 - 665027
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagta---atacatgttgaaatttcatcaaagatacggaagctagtattagatgtggc 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||   |||||||||  |||||||||||| || ||||||||| || |||||||||     
T  664885 ttttagggaaaataacttatatcatttcattaaaaattaaatcagtagtaatacatgtttgaatttcatcaaaaattcggaagctactactagatgtggt 664984  T
Q  217 tgccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    || |||||||||||| |||||||||||||||||||| ||||||    
T  664985 tgtcttagctaattcatgtgcaacctcatttgcttgtctccta 665027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 123 - 256
Target Start/End: Original strand, 7097321 - 7097454
Alignment:
Q  123 tagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagcta-gtattagatgtggctgcct 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||  |||||||| ||| || ||||||||||||    
T  7097321 tagggaaaataacttatatcatttcattaaaaattaaatcagtaatacatgttggaatttcattaaagatgtggaagctaggtaata-atgtggctgcct 7097419  T
Q  222 tagctaattcttgtgcaacctcatttgcttgcctc 256  Q
    ||||||| || || |||||||||||||||||||||    
T  7097420 tagctaactcatgagcaacctcatttgcttgcctc 7097454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 29526983 - 29526857
Alignment:
Q  133 aacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattct 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    ||||||||||||||||||||||     
T  29526983 aacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattca 29526884  T
Q  233 tgtgcaacctcatttgcttgcctccta 259  Q
    || ||||||||||||||||||||||||    
T  29526883 tgagcaacctcatttgcttgcctccta 29526857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 13784032 - 13783900
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| |||||| |||||||||| ||| ||||| ||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  13784032 gaaagaaacttaaatcatttcataaaagattaattcagtaatacatgttgggatttcatcaaagatacggaagctagaactagatgtggctgccttagct 13783933  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |     |||||||||||||| ||||||||||||    
T  13783932 agagtatgtgcaacctcattcgcttgcctccta 13783900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 263 - 378
Target Start/End: Original strand, 665067 - 665182
Alignment:
Q  263 aattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaa 362  Q
    |||||||||||||||||||| ||  || ||||||| ||||||| |||||||||||||||||||||||||||||||||||   || ||||||| |||||||    
T  665067 aattggatacaactatccataatataaccaaatttggtgacatgtcctcgacctttgttgaaataatcagctactctttttgaatcaacctcaaaatcaa 665166  T
Q  363 cgttagcaagttgaag 378  Q
    |||| |||||||||||    
T  665167 cgtttgcaagttgaag 665182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 19016938 - 19017065
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattc 231  Q
    |||||| |||||||| |||||||||||||||||||||| ||| || ||| |||||||||||||| ||||||| ||| ||||| | |||||||| ||||||    
T  19016938 taacttttatcattttattaaaaattaaatcagtaatatatgctggaatctcatcaaagatacgaaagctaggatttgatgtagttgccttagttaattc 19017037  T
Q  232 ttgtgcaacctcatttgcttgcctccta 259  Q
     || |||||| |||||||||||||||||    
T  19017038 atgggcaaccacatttgcttgcctccta 19017065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 224
Target Start/End: Complemental strand, 19541969 - 19541872
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttag 224  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||  ||| |||||||| | ||||||||| ||||||||    
T  19541969 gaaagtaacttatatcatttcattaaaaattaattcagtaatacatgttagaatttcatcaaatgtacagaagctagaactagatgtggttgccttag 19541872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 15455963 - 15455851
Alignment:
Q  120 ttttagggaaagtaa-cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    |||||||||    
T  15455963 ttttagggaaaataaacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctg 15455864  T
Q  219 ccttagctaattc 231  Q
    |||||||||||||    
T  15455863 ccttagctaattc 15455851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 5609408 - 5609547
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    |||||| |||||||| ||||||||||||||||||||| | |||| |||||||||  ||||| ||||||||||   ||||||||||| ||||||| |||||    
T  5609408 ttttagagaaagtaaattatatcatttcattaaaaatcagatcattaatacatgcagaaatatcatcaaagacctggaagctagtactagatgtagctgc 5609507  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
     ||||||||    | |||||||||||| ||||||||||||    
T  5609508 tttagctaaagtgtatgcaacctcattcgcttgcctccta 5609547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 259
Target Start/End: Complemental strand, 5086752 - 5086624
Alignment:
Q  131 gtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaatt 230  Q
    |||| |||||||||||||||||| || ||||||| ||||||||  | ||| |||||||||||  ||||||||||| |||||||||||||| ||||||       
T  5086752 gtaaattatatcatttcattaaatatcaaatcagaaatacatgcaggaatatcatcaaagatctggaagctagtactagatgtggctgccctagctagag 5086653  T
Q  231 cttgtgcaacctcatttgcttgcctccta 259  Q
      |||||||||||||| ||||||||||||    
T  5086652 tatgtgcaacctcattcgcttgcctccta 5086624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 27243951 - 27244078
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    |||||| |||||||| ||||||||||||||||||| ||| ||| | |||||| |||| ||| ||||||||||   ||||||||||| |||||||||||||    
T  27243951 ttttagagaaagtaaattatatcatttcattaaaa-ttagatcggaaatacacgttggaatatcatcaaagacctggaagctagtactagatgtggctgc 27244049  T
Q  220 cttagctaattcttgtgcaacctcatttg 248  Q
    |||||||||    ||||||||||||||||    
T  27244050 cttagctaacatatgtgcaacctcatttg 27244078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 33973251 - 33973124
Alignment:
Q  122 ttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgcct 221  Q
    |||| |||||||| ||| ||||||||||||||||| | ||  | ||||||||||||||| |||||||||||  ||||||||||| ||||||||||| |||    
T  33973251 ttagagaaagtaaattacatcatttcattaaaaatcagattggaaatacatgttgaaatatcatcaaagatctggaagctagtactagatgtggctacct 33973152  T
Q  222 tagctaattct-tgtgcaacctcatttg 248  Q
    |||||||   | ||||||||||||||||    
T  33973151 tagctaaacgtatgtgcaacctcatttg 33973124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 378
Target Start/End: Original strand, 21588226 - 21588343
Alignment:
Q  261 agaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatc 360  Q
    |||||||||||| ||| ||||| |||||| ||||||  || |||||||||| ||||||||||||||||||||||| | ||| | || ||||||| |||||    
T  21588226 agaattggatactactgtccataatggaaccaaattcggtaacatctcctcaacctttgttgaaataatcagctattattttcgaatcaacctcaaaatc 21588325  T
Q  361 aacgttagcaagttgaag 378  Q
    |||| | |||||||||||    
T  21588326 aacgattgcaagttgaag 21588343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 21824529 - 21824406
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| ||||  | |||||||| || ||| ||||||||||   ||||||||| | || |||||||||||||||||||    ||     
T  21824529 ttatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagacttggaagctagaactacatgtggctgccttagctaacgtatga 21824430  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  21824429 gcaacctcatttgcttgcctccta 21824406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 9697274 - 9697349
Alignment:
Q  123 tagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaa 198  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||    
T  9697274 taggaaaaataaattatatcatttcattaaaaattaaatcagtaatacatgttggaatctcatcaaatataaggaa 9697349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 5609582 - 5609687
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    ||||||| |||||||  |||||||| ||  || ||||||  ||||||||||| |||||||||||||||||||||||||||||||   |  ||||||||||    
T  5609582 tacagaagtggatactgctatccataataaaaccaaattcggtgacatctccacgacctttgttgaaataatcagctactcttttagagccaacctcgaa 5609681  T
Q  358 atcaac 363  Q
    ||||||    
T  5609682 atcaac 5609687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 32535075 - 32535140
Alignment:
Q  276 tatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||||||| ||| ||||||  ||||||||||| |||||||||||||||||||||||||||||||    
T  32535075 tatccatgatagaaccaaattcggtgacatctccacgacctttgttgaaataatcagctactcttt 32535140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 21824330 - 21824266
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||| |||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  21824330 gtgacatctccacgacctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaac 21824266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 13783845 - 13783785
Alignment:
Q  278 tccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactc 338  Q
    ||||| |||||| ||||||  ||||||||||| || ||||||||||||||||| |||||||    
T  13783845 tccattatggaaccaaattcggtgacatctccacggcctttgttgaaataatccgctactc 13783785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 27244140 - 27244228
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaa 362  Q
    ||||||||| |||||| |||| |  ||||||| ||| ||||| ||||||||||||||| |||||||||   |  |||||||||||||||    
T  27244140 actatccataatggaaccaaactcggtgacatttccacgaccattgttgaaataatcaactactctttttgagtcaacctcgaaatcaa 27244228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 363
Target Start/End: Complemental strand, 33973037 - 33972973
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||   |  ||||||||||||||||    
T  33973037 gtgacatctccacgaccattgttgaaataatcagctactcgttttgagtcaacctcgaaatcaac 33972973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 9678141 - 9678174
Alignment:
Q  169 acatgttgaaatttcatcaaagatacggaagcta 202  Q
    ||||||||||||||||||||||||| ||||||||    
T  9678141 acatgttgaaatttcatcaaagatatggaagcta 9678174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 9e-40; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 26307527 - 26307404
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||| |||||| |||||||||||||| |||||||| | |||    
T  26307527 ttatatcatttcattaaaaattaaatcagtaatacatgttggaatatcatcaaagacatggaaactagtactagatgtggctgccctagctaatgcatgt 26307428  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    |||||||||||| |||||||||||    
T  26307427 gcaacctcatttacttgcctccta 26307404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 15790204 - 15790072
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| |||||| |||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  15790204 gaaagaaacttaaatcatttcattaaagattaattcagtaatacatgttgggatttcatcaaagatacggaagctagaactagatgtggctgccttagct 15790105  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |  |  |||||||||||||| ||||||||||||    
T  15790104 agattatgtgcaacctcattcgcttgcctccta 15790072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 32073504 - 32073644
Alignment:
Q  120 ttttagggaaagtaa-cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    ||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    |||||||||    
T  32073504 ttttagggaaaataaacttatatcattttattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctg 32073603  T
Q  219 ccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  32073604 ccttagctaattcatgagcaacctcatttgcttgcctccta 32073644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 8968303 - 8968424
Alignment:
Q  138 atatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc 237  Q
    |||||||||||||| |||| ||||   |||||||||| | ||| ||||||||||   ||||||||||| ||||||||||||||||||||||  | |||||    
T  8968303 atatcatttcattagaaatcaaattgttaatacatgtaggaatatcatcaaagacttggaagctagtactagatgtggctgccttagctaaagcatgtgc 8968402  T
Q  238 aacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||    
T  8968403 aacctcatttgcttgcctccta 8968424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 129 - 259
Target Start/End: Complemental strand, 2439649 - 2439519
Alignment:
Q  129 aagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaa 228  Q
    |||||| ||||||||||||||||||||||||||  | |||||||| || ||| | ||||||||   ||||||||||| || |||||||||||||||||||    
T  2439649 aagtaaattatatcatttcattaaaaattaaattggaaatacatgctggaatattatcaaagacttggaagctagtactacatgtggctgccttagctaa 2439550  T
Q  229 ttcttgtgcaacctcatttgcttgcctccta 259  Q
        || ||||||||||||||||||||||||    
T  2439549 agtatgagcaacctcatttgcttgcctccta 2439519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 9734367 - 9734488
Alignment:
Q  138 atatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc 237  Q
    |||||||||||||| |||| | ||  |||||| |||| | ||| ||||||||||   ||||||||||| ||||||||||||||||||||||  | |||||    
T  9734367 atatcatttcattagaaatcagattggtaatatatgtaggaatatcatcaaagacctggaagctagtactagatgtggctgccttagctaaagcatgtgc 9734466  T
Q  238 aacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||    
T  9734467 aacctcatttgcttgcctccta 9734488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 2651713 - 2651845
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||  | | | ||||||||||   ||||||||||| |||||||||||||| |||||    
T  2651713 gaaagtgaattatatcatttcattaaaaatcaaatcagtaatacatgcaggagtatcatcaaagacctggaagctagtactagatgtggctgccctagct 2651812  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    | |   |||||||||||||| | ||||||||||    
T  2651813 agtgtatgtgcaacctcattcgtttgcctccta 2651845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 34935241 - 34935118
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| ||||| | |||||||| || ||  ||||||||     ||||||||||| || ||||||||||||||||||| |  |||    
T  34935241 ttatatcatttcattaaaaataaaatcggaaatacatgctggaacatcatcaaatgcctggaagctagtactacatgtggctgccttagctaacttatgt 34935142  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  34935141 gcaacctcatttgcttgcctccta 34935118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 14504025 - 14504157
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||| ||| |||| ||||||||||||| || |||||| |||||||||  | ||| ||||||||||   ||||||||||| |||||||||||| |||||||    
T  14504025 gaaaataaattatgtcatttcattaaagatcaaatcactaatacatgcaggaatatcatcaaagaccaggaagctagtactagatgtggctgtcttagct 14504124  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |   | |||||||||||||| ||||||||||||    
T  14504125 agagcgtgtgcaacctcattcgcttgcctccta 14504157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 2439468 - 2439379
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||| |||||  |||| |  ||||||||||| |||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  2439468 actatccataatggagccaaactcggtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaac 2439379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 14504192 - 14504297
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    ||||||| ||||||  ||||||||| ||  || ||||||  |||||||||||  |||||||||||||||||||||||| |||||  ||  ||||||||||    
T  14504192 tacagaagtggatattactatccataataaaaccaaattcggtgacatctccatgacctttgttgaaataatcagctattcttttaaagtcaacctcgaa 14504291  T
Q  358 atcaac 363  Q
    ||||||    
T  14504292 atcaac 14504297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 46092089 - 46091971
Alignment:
Q  135 cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttg 234  Q
    ||||||| |||||| |||| || | ||||| |||||||| || ||  |||||||||||  ||||| ||||| ||||||| | || ||||||||||   ||    
T  46092089 cttatattatttcactaaagataagatcagcaatacatgctggaacatcatcaaagatctggaagttagtactagatgtagttgtcttagctaatgtatg 46091990  T
Q  235 tgcaacctcatttgcttgc 253  Q
    |||||||||||||||||||    
T  46091989 tgcaacctcatttgcttgc 46091971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 34935067 - 34934978
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||| |||||  |||| |  ||||||||||| ||||| |||||||||||||||||||||||||   |  ||||||||||||||||    
T  34935067 actatccataatggagccaaactcggtgacatctccacgaccattgttgaaataatcagctactcttttttagtcaacctcgaaatcaac 34934978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 9734523 - 9734628
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    |||||||||||| || | |||||||||| ||  |||| |  |||||||||||  |||| ||||||||||| |||||||||||||   |  ||||||||||    
T  9734523 tacagaattggacactattatccatgatagagccaaactcggtgacatctccatgaccattgttgaaatagtcagctactcttttagagtcaacctcgaa 9734622  T
Q  358 atcaac 363  Q
    ||||||    
T  9734623 atcaac 9734628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 15790017 - 15789957
Alignment:
Q  278 tccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactc 338  Q
    ||||| || ||| ||||||  ||||||||||| |||||||||||||||||||| |||||||    
T  15790017 tccattatagaaccaaattcggtgacatctccacgacctttgttgaaataatctgctactc 15789957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 341
Target Start/End: Original strand, 2651925 - 2651963
Alignment:
Q  303 catctcctcgacctttgttgaaataatcagctactcttt 341  Q
    ||||||| || ||||||||||||||||||||||||||||    
T  2651925 catctccgcggcctttgttgaaataatcagctactcttt 2651963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 29704756 - 29704679
Alignment:
Q  182 tcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    |||||||| ||||||||||||||    || |||| |||||| |||||||| || |||||| |||| ||||||||||||    
T  29704756 tcatcaaaaatacggaagctagtcaaggaagtggatgcctttgctaattcatgggcaaccacattcgcttgcctccta 29704679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 13434401 - 13434437
Alignment:
Q  163 agtaatacatgttgaaatttcatcaaagatacggaag 199  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  13434401 agtaatacatgctgaaatttcatcatagatacggaag 13434437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 8724871 - 8724739
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| |||||| |||||||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  8724871 gaaagaaacttaaatcatttcattaaagattaattcagtaatacatgttgggatttcatcaaagatacggaagctagaactagatgtggctgccttagct 8724772  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |  |  |||||||||||||| ||||||||||||    
T  8724771 agattatgtgcaacctcattcgcttgcctccta 8724739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 13065376 - 13065508
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| | ||||||||||||||||||||    
T  13065376 gaaagaaacttaaatcatttcattaaagattaaatcagtaatacatgttgggatttcatcaaagatacggaagctagaactagatgtggctgccttagct 13065475  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |     |||||||||||||| ||||||||||||    
T  13065476 agagtatgtgcaacctcattcgcttgcctccta 13065508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 11619070 - 11619209
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    |||||| |||| |||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||||||| | ||||||||||| |||||||||||||    
T  11619070 ttttagagaaaataacttatatcatttcattaaagattaaatcagaaatacatgttggaatatcatcaaagacatggaagctagtactagatgtggctgc 11619169  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    |||| ||||| | || ||||||||||| | ||||||||||    
T  11619170 cttaactaatgcatgcgcaacctcattcgtttgcctccta 11619209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 31291852 - 31291732
Alignment:
Q  128 aaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagcta 227  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||||||  |||||||| | | ||||||| || ||||||||    
T  31291852 aaagtaacttatatcatttcattaaatattaaatcattaatacatgttggaatctcatcaaagatatagaagctaggaatggatgtggttgtcttagcta 31291753  T
Q  228 attcttgtgcaacctcatttg 248  Q
    |||| || |||||| ||||||    
T  31291752 attcatgggcaaccgcatttg 31291732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 42765440 - 42765308
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| || ||||||||||||||||||||||| |||| |||||||||| | ||| |||||||||||  ||||||||||| |||||||||||||||| |||    
T  42765440 gaaagaaaattatatcatttcattaaaaattagatcactaatacatgtaggaatatcatcaaagatctggaagctagtactagatgtggctgccttggct 42765341  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |     || ||||||||||||||||||||||||    
T  42765340 agagtgtgagcaacctcatttgcttgcctccta 42765308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 255
Target Start/End: Complemental strand, 20706284 - 20706149
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    |||||| |||||||| | ||| ||||| |||| |||||| ||| ||||||||||||  ||| ||||||||||   ||||||||||| |||||||||||||    
T  20706284 ttttagagaaagtaaatcatagcattttattagaaattagatcggtaatacatgttagaatatcatcaaagacctggaagctagtactagatgtggctgc 20706185  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcct 255  Q
    |||||||||  | |||||||||||||||||||||||    
T  20706184 cttagctaaagcatgtgcaacctcatttgcttgcct 20706149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 131 - 259
Target Start/End: Original strand, 19609065 - 19609193
Alignment:
Q  131 gtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaatt 230  Q
    |||| ||||||||||||||||||||||| ||| |||||||||| || ||| |||||||| |   |||||||| || ||||||||||| | ||||||||      
T  19609065 gtaaattatatcatttcattaaaaattagatcggtaatacatgctggaatatcatcaaacacctggaagctaatactagatgtggctactttagctaaaa 19609164  T
Q  231 cttgtgcaacctcatttgcttgcctccta 259  Q
    | || ||||||||||||||||||||||||    
T  19609165 catgagcaacctcatttgcttgcctccta 19609193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 20587787 - 20587666
Alignment:
Q  138 atatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc 237  Q
    |||||||||||||| |||| | ||| ||||||||||| | ||| ||||||||||   ||||| ||||| ||||||||||||||||||||||  | |||||    
T  20587787 atatcatttcattagaaatcagatcggtaatacatgtaggaatatcatcaaagacctggaaggtagtactagatgtggctgccttagctaaagcatgtgc 20587688  T
Q  238 aacctcatttgcttgcctccta 259  Q
    |||||||||| ||| |||||||    
T  20587687 aacctcattttcttacctccta 20587666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 203
Target Start/End: Complemental strand, 40385006 - 40384923
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctag 203  Q
    ||||||| ||| ||||||||||| |||||||||||||||||| | | |||||||||| | |||||||||||||| |||||||||    
T  40385006 ttttaggaaaaataacttatatcttttcattaaaaattaaattaatgatacatgttggattttcatcaaagatatggaagctag 40384923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 36961880 - 36962012
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| || ||||||||||||||||||||||| |||    |||||||| | ||| |||||||| ||  ||||||||||| |||||| ||||||||| |||    
T  36961880 gaaagaaaattatatcatttcattaaaaattagatcgccgatacatgtaggaatatcatcaaaaatctggaagctagtactagatgcggctgccttggct 36961979  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |     || ||||||||||||||||||||||||    
T  36961980 agagtgtgagcaacctcatttgcttgcctccta 36962012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 11619243 - 11619367
Alignment:
Q  257 ctacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcga 356  Q
    ||||| |||||||||   |||||||  || ||| ||||||  ||||||||||| |||||||||||||||||||| ||||||||||   |  |||||||||    
T  11619243 ctacataattggatattgctatccacaatagaaccaaattcggtgacatctccacgacctttgttgaaataatcggctactcttttagagtcaacctcga 11619342  T
Q  357 aatcaacgttagcaagttgaagctc 381  Q
    | ||||| || | ||||||||||||    
T  11619343 agtcaacatttgaaagttgaagctc 11619367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 20587631 - 20587548
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||||||||| || |||||||||||| ||  | || |  ||||||||||| ||||| |||||||||||||||||||||||||    
T  20587631 tacagaattggacactactatccatgatagagccgaactcggtgacatctccacgaccattgttgaaataatcagctactcttt 20587548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 19609261 - 19609311
Alignment:
Q  291 caaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  19609261 caaattcagtgacatctccacgaccattgttgaaataatcagctactcttt 19609311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 18521779 - 18521675
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    ||||||||||||||| |||||  || ||| || |||||| ||||| |||||||| ||||||||||||||||| ||||||| ||| | || ||||||| ||    
T  18521779 tacagaattggatactactatttataatg-aaccaaattcagtgatatctcctcaacctttgttgaaataattagctacttttttctaatcaacctcaaa 18521681  T
Q  358 atcaac 363  Q
     |||||    
T  18521680 gtcaac 18521675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 20706110 - 20706027
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||||||||| || |||||||||||| ||  | || |  ||||||||||| ||||| |||||||||||| ||||||||||||    
T  20706110 tacagaattggacactactatccatgatagagccgaactcggtgacatctccacgaccattgttgaaataaccagctactcttt 20706027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 245
Target Start/End: Original strand, 38640006 - 38640117
Alignment:
Q  134 acttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattctt 233  Q
    ||||||||||||||||||||||||||||| || ||||||| |  | |||||||||||||   |||| ||| |    |||||||||||||| |||| || |    
T  38640006 acttatatcatttcattaaaaattaaatcggtgatacatgctagactttcatcaaagatgtagaagttagaaaataatgtggctgccttaactaactcat 38640105  T
Q  234 gtgcaacctcat 245  Q
    | ||||||||||    
T  38640106 gagcaacctcat 38640117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 363
Target Start/End: Complemental strand, 31291708 - 31291603
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    ||||||||||||||| | |||||||||||||| |||| |  |||| |||||| | |||| | || ||||||||| ||||| ||| |||  ||||||| ||    
T  31291708 tacagaattggatactattatccatgatggaaccaaactcggtgatatctcccctacctctattaaaataatcaactacttttttcaattcaacctcaaa 31291609  T
Q  358 atcaac 363  Q
    ||||||    
T  31291608 atcaac 31291603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 338
Target Start/End: Complemental strand, 8724684 - 8724624
Alignment:
Q  278 tccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactc 338  Q
    ||||| || ||| ||||||  ||||||||||| |||||||||||||||||||| |||||||    
T  8724684 tccattatagaaccaaattcggtgacatctccacgacctttgttgaaataatctgctactc 8724624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 13065544 - 13065623
Alignment:
Q  259 acagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactc 338  Q
    |||||| ||||| | ||| ||||| |||||| ||||||  ||||||||||| |  ||||||||||||||||| |||||||    
T  13065544 acagaaatggatgctactgtccattatggaaccaaattcggtgacatctccactgcctttgttgaaataatccgctactc 13065623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 36962103 - 36962152
Alignment:
Q  314 cctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  36962103 cctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaac 36962152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 42765217 - 42765168
Alignment:
Q  314 cctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  42765217 cctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaac 42765168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 32108595 - 32108455
Alignment:
Q  120 ttttagggaaagtaa-cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    |||||||||    
T  32108595 ttttagggaaaataaacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctg 32108496  T
Q  219 ccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||||||||| || ||||||||||||||||||||||||    
T  32108495 ccttagctaattcatgagcaacctcatttgcttgcctccta 32108455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 133 - 259
Target Start/End: Original strand, 26418699 - 26418825
Alignment:
Q  133 aacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattct 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    ||||||||||||||||||||||     
T  26418699 aacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattca 26418798  T
Q  233 tgtgcaacctcatttgcttgcctccta 259  Q
    || ||||||||||||||||||||||||    
T  26418799 tgagcaacctcatttgcttgcctccta 26418825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 120 - 245
Target Start/End: Original strand, 44464589 - 44464714
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||||||| || ||| |||| ||||||||||| | ||| || || |||||||| ||||    
T  44464589 ttttagggaaaataacttatatcatttcattaaaaattaaagcagtaatatatattggaattacatcaaagatatgaaagttaatactagatgtgactgc 44464688  T
Q  220 cttagctaattcttgtgcaacctcat 245  Q
    |||||||||  | |||||||||||||    
T  44464689 cttagctaaaacatgtgcaacctcat 44464714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 120 - 259
Target Start/End: Original strand, 11420258 - 11420398
Alignment:
Q  120 ttttagggaaagtaa-cttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| |||| |||||| | |||||||||||||  ||||||||| |    |||||||||    
T  11420258 ttttagggaaaataaacttatatcatttcattaaaaattaaatcagaaatatatgttggactttcatcaaagatgtggaagctaggacctaatgtggctg 11420357  T
Q  219 ccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||| ||||||| ||  ||||||||||| |||||||||||    
T  11420358 ccttaactaattcatgaacaacctcatttacttgcctccta 11420398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 256
Target Start/End: Original strand, 38532611 - 38532740
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||  | ||| |||||||||| | | ||||||||||||||||||||| || |||||    
T  38532611 gaaagtaacttatatcattttattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacatgtaagctagtattagatgtggctaccctagct 38532710  T
Q  227 aattcttgtgcaacctcatttgcttgcctc 256  Q
    | |   |||||||||||||| |||||||||    
T  38532711 agtgtatgtgcaacctcattcgcttgcctc 38532740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 132 - 259
Target Start/End: Complemental strand, 21182792 - 21182667
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattc 231  Q
    ||||||||||||||  |||||||||||||||||||||| |||||| ||| |||||||||  | | ||||||||| ||||||| ||| |||||| |||| |    
T  21182792 taacttatatcatt--attaaaaattaaatcagtaatatatgttggaatatcatcaaaggcatgaaagctagtactagatgtagctcccttagttaatgc 21182695  T
Q  232 ttgtgcaacctcatttgcttgcctccta 259  Q
     |||||||||||||||| ||||||||||    
T  21182694 atgtgcaacctcatttgtttgcctccta 21182667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 27527456 - 27527324
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||  | ||| ||||||||||   ||||||||||| |||||||||||||| || ||    
T  27527456 gaaagtaaattatatcatttcattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacctggaagctagtactagatgtggctgccctaact 27527357  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    | |   |||||||||||||| ||||||||||||    
T  27527356 agtgtatgtgcaacctcattcgcttgcctccta 27527324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 128 - 259
Target Start/End: Complemental strand, 4180131 - 4180000
Alignment:
Q  128 aaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagcta 227  Q
    ||||||| ||||||||||||||||||||||| ||| |||||| ||| || ||| |||||||| |   ||||||||||| ||||||||||||| |||| ||    
T  4180131 aaagtaaattatatcatttcattaaaaattagatcggtaatatatgctggaatatcatcaaacacctggaagctagtactagatgtggctgctttagtta 4180032  T
Q  228 attcttgtgcaacctcatttgcttgcctccta 259  Q
    |  | || ||||||||||||||||||||||||    
T  4180031 aaacatgagcaacctcatttgcttgcctccta 4180000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 144 - 259
Target Start/End: Complemental strand, 11644893 - 11644778
Alignment:
Q  144 tttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgcaacctc 243  Q
    ||||||||||||| |||||||||||| |||||| ||| |||||||||||  ||||| |||||||||||||| |||||||||||||    || ||||||||    
T  11644893 tttcattaaaaataaaatcagtaatatatgttggaatatcatcaaagatctggaagttagtattagatgtgactgccttagctaaagtatgcgcaacctc 11644794  T
Q  244 atttgcttgcctccta 259  Q
    ||||| ||||||||||    
T  11644793 atttgtttgcctccta 11644778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 341
Target Start/End: Complemental strand, 22161745 - 22161662
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||| |||||||||| ||||||||| || ||| ||||||| |||| ||||||  ||||||||||||||||||||||||||||||    
T  22161745 tacaaaattggatactactatccataatagaaccaaatttggtgatatctccatgacctttgttgaaataatcagctactcttt 22161662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 25594732 - 25594863
Alignment:
Q  128 aaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagcta 227  Q
    ||||||| |||||||||||||||||| || ||||||| ||||||||  | ||| ||||||||| |  ||||||||||| |||||||||||||| ||| ||    
T  25594732 aaagtaaattatatcatttcattaaatatcaaatcagaaatacatgcaggaatatcatcaaaggtctggaagctagtactagatgtggctgccctagtta 25594831  T
Q  228 attcttgtgcaacctcatttgcttgcctccta 259  Q
         |||||||||||||| || |||||||||    
T  25594832 gagtatgtgcaacctcattcgcctgcctccta 25594863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 259
Target Start/End: Complemental strand, 22161902 - 22161780
Alignment:
Q  137 tatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtg 236  Q
    ||||||||||||||||| |||| |  | |||||||||| | ||| |||||||||||  ||| ||||||| |||||| ||||||||||||||  |  || |    
T  22161902 tatatcatttcattaaagattagagaactaatacatgtaggaatatcatcaaagatctggaggctagtactagatgcggctgccttagctagattatgag 22161803  T
Q  237 caacctcatttgcttgcctccta 259  Q
    |||||||||| ||||||||||||    
T  22161802 caacctcattcgcttgcctccta 22161780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 4179932 - 4179882
Alignment:
Q  291 caaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||| |||||||||||| ||||| |||||||||||||||||||||||||    
T  4179932 caaattcagtgacatctccacgaccattgttgaaataatcagctactcttt 4179882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 21182633 - 21182555
Alignment:
Q  257 ctacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagcta 335  Q
    ||||| |||||||| | ||||||||| || ||| |||||| |||||||||||| | |||||||||||||||||| ||||    
T  21182633 ctacataattggatgctactatccataatagaaccaaattcagtgacatctccacaacctttgttgaaataatcggcta 21182555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 298 - 341
Target Start/End: Complemental strand, 11644703 - 11644660
Alignment:
Q  298 agtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  11644703 agtgacatcttcacgacctttgttgaaataatcagctactcttt 11644660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 38532823 - 38532859
Alignment:
Q  303 catctcctcgacctttgttgaaataatcagctactct 339  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38532823 catctccacgacctttgttgaaataatcagctactct 38532859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 29600961 - 29600919
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||    
T  29600961 gtgacatctccacgaccattgttgaaataatcagctattcttt 29600919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 29601079 - 29601037
Alignment:
Q  217 tgccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||||||||  | |||||||||||||||||||||||||||    
T  29601079 tgccttagctaaagcatgtgcaacctcatttgcttgcctccta 29601037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 133 - 259
Target Start/End: Complemental strand, 47783146 - 47783020
Alignment:
Q  133 aacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattct 232  Q
    |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||  ||||||||| |    ||||||||||||||||||||||     
T  47783146 aacttatatcatttcattaaaaattaaatcagaaatacatgttggactttcatcaaagatgtggaagctaggacctaatgtggctgccttagctaattca 47783047  T
Q  233 tgtgcaacctcatttgcttgcctccta 259  Q
    || ||||||||||||||||||||||||    
T  47783046 tgagcaacctcatttgcttgcctccta 47783020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 20088962 - 20089088
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaa-attaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagc 225  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| || |||||| ||||||||     
T  20088962 gaaagtaacttatattatttcattaaaaaattaaatcagtgatacatgttggaatttcatcaaagatacggaggctagtactaaatgtggttgccttaga 20089061  T
Q  226 taattcttgtgcaacctcatttgcttg 252  Q
    |||||| |||| |||||||||| ||||    
T  20089062 taattcatgtgtaacctcatttacttg 20089088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 123 - 259
Target Start/End: Complemental strand, 13201005 - 13200869
Alignment:
Q  123 tagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgcctt 222  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| ||  ||||||||| |    || ||| ||||||    
T  13201005 tagggaaaataacttatatcatttcattaaaaattaaatcagtgatacatgttggactttcatcaaaaatgtggaagctagaaaataatatggttgcctt 13200906  T
Q  223 agctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    |||||| || || ||||||||||||||||||||||||    
T  13200905 agctaactcatgagcaacctcatttgcttgcctccta 13200869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 132 - 259
Target Start/End: Original strand, 4946603 - 4946730
Alignment:
Q  132 taacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattc 231  Q
    ||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||  ||||||||| |    ||||||||| ||||||||| ||    
T  4946603 taacttatatcatttcattaaaaattaaatcagaaatacatgctggaattttatcaaagatctggaagctaggacataatgtggctgtcttagctaactc 4946702  T
Q  232 ttgtgcaacctcatttgcttgcctccta 259  Q
     || ||||||||||||||||||||||||    
T  4946703 atgagcaacctcatttgcttgcctccta 4946730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 15066066 - 15065934
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||||| |||||||||||||||||| || ||||||||||||||||  | ||| ||||||||||   ||||||||||| |||||||||||||| |||||    
T  15066066 gaaagtaaattatatcatttcattaaagatcaaatcagtaatacatgcaggaatatcatcaaagacctggaagctagtactagatgtggctgccctagct 15065967  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    | |   |||||||||||||| ||||||||||||    
T  15065966 agtgtatgtgcaacctcattcgcttgcctccta 15065934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 138 - 259
Target Start/End: Complemental strand, 25553399 - 25553278
Alignment:
Q  138 atatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc 237  Q
    |||||||||||||| |||| | ||  ||||||||||| | ||| ||||||||||   ||||||||||| ||||||||||||||||||||||  | |||||    
T  25553399 atatcatttcattagaaatcagattggtaatacatgtaggaatatcatcaaagacttggaagctagtactagatgtggctgccttagctaaagcatgtgc 25553300  T
Q  238 aacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||    
T  25553299 aacctcatttgcttgcctccta 25553278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 152 - 257
Target Start/End: Complemental strand, 40687097 - 40686992
Alignment:
Q  152 aaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgcaacctcatttgctt 251  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||||||| | | ||||||| |||||| |||||||| || ||||||||||||| ||    
T  40687097 aaaattaaatcagtaatacatgttggaatctcataaaagatacggaagctaggaatggatgtggttgccttggctaattcatgggcaacctcatttgttt 40686998  T
Q  252 gcctcc 257  Q
    | ||||    
T  40686997 gtctcc 40686992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 13563651 - 13563726
Alignment:
Q  123 tagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaa 198  Q
    |||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||    
T  13563651 taggaaaaataaattatatcatttcattaaaaattaaatcagtaatacatgttggaatctcatcaaatataaggaa 13563726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 378
Target Start/End: Original strand, 20089135 - 20089250
Alignment:
Q  263 aattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaa 362  Q
    |||||||||| | ||||||| |||||  ||||||  ||||||||||||||| ||||||||||||| |||| ||||||||   |  ||||||| |||||||    
T  20089135 aattggatactattatccataatggacccaaattcggtgacatctcctcgatctttgttgaaatagtcagttactctttttgagtcaacctcaaaatcaa 20089234  T
Q  363 cgttagcaagttgaag 378  Q
    | || |||||||||||    
T  20089235 catttgcaagttgaag 20089250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 17459523 - 17459429
Alignment:
Q  165 taatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||| || | ||| ||||||||||  |||||||||||| |||||||||||||||| ||||   | |||||||||||||| ||||||||||||    
T  17459523 taatacacgtaggaatatcatcaaagacccggaagctagtactagatgtggctgcctttgctagaacatgtgcaacctcattcgcttgcctccta 17459429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 255
Target Start/End: Original strand, 13905767 - 13905902
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    ||||||||||| ||||||||||| ||| |||||| || ||||||||||| |||| || ||||| ||||  ||||| |||||||| |    ||||| ||||    
T  13905767 ttttagggaaaataacttatatctttttattaaatatcaaatcagtaatgcatgctggaattttatcattgatacagaagctaggaaggaatgtgactgc 13905866  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcct 255  Q
    ||||||||| || ||  ||| |||||||| ||||||    
T  13905867 cttagctaactcatggacaatctcatttgtttgcct 13905902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 363
Target Start/End: Complemental strand, 17459378 - 17459289
Alignment:
Q  274 actatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||| || ||| ||||||  |||| ||||||  |||||||||||||||||||| |||||||||   |  ||||||||||||||||    
T  17459378 actatccataatagaaccaaattcggtgatatctccatgacctttgttgaaataatcaactactcttttagagtcaacctcgaaatcaac 17459289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 40686955 - 40686876
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctact 337  Q
    |||| ||||||| || ||||||| | |||||| ||||||| || | ||||||||||||||| || ||||||| |||||||    
T  40686955 tacataattggacactactatccttaatggaagcaaatttggttatatctcctcgacctttcttaaaataattagctact 40686876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 13543085 - 13543118
Alignment:
Q  169 acatgttgaaatttcatcaaagatacggaagcta 202  Q
    ||||||||||||||||||||||||| ||||||||    
T  13543085 acatgttgaaatttcatcaaagatatggaagcta 13543118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 134 - 259
Target Start/End: Original strand, 2149 - 2274
Alignment:
Q  134 acttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattctt 233  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| | | |||||||||||||||||||     |    
T  2149 acttaaatcatttcattaaaaattaaatcagtaatacatgttgggatttcatcaaagatacggaagctagaactggatgtggctgccttagctagagtat 2248  T
Q  234 gtgcaacctcatttgcttgcctccta 259  Q
    ||| ||||||||| ||||||||||||    
T  2249 gtgaaacctcattcgcttgcctccta 2274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 2310 - 2389
Alignment:
Q  259 acagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactc 338  Q
    |||||| ||||| | ||| ||||| |||||| ||||||  ||||||||||| |  ||||||||||||||||| |||||||    
T  2310 acagaaatggatgctactgtccattatggaaccaaattcggtgacatctccactgcctttgttgaaataatccgctactc 2389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 124 - 259
Target Start/End: Complemental strand, 52840 - 52705
Alignment:
Q  124 agggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgcctta 223  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||  ||||||||| |    ||||||||||||||    
T  52840 agggaaaataacttatatcatttcattaaaaattaaatcagaaatacatgctggaatttcatcaaagatgtggaagctaggacataatgtggctgcctta 52741  T
Q  224 gctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||| || ||  |||| ||||||||||||||||||    
T  52740 gctaactcatgaacaacgtcatttgcttgcctccta 52705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 5e-29; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 21084914 - 21085035
Alignment:
Q  138 atatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgc 237  Q
    ||||||||||||||||||| | ||| ||||||||||||| ||| ||||||||||   | ||| ||||| ||||||||||||||||||||||  | |||||    
T  21084914 atatcatttcattaaaaatcagatcggtaatacatgttggaatatcatcaaagacctgaaaggtagtactagatgtggctgccttagctaaagcatgtgc 21085013  T
Q  238 aacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||    
T  21085014 aacctcatttgcttgcctccta 21085035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 120 - 259
Target Start/End: Complemental strand, 7861767 - 7861628
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||  | ||| ||| ||   || ||| |||    
T  7861767 ttttagggaaaataacttatatcatttcattaaaaattaaatcagaactatatgctgaaatttcatcaaagatgtgaaagttaggatataatatggttgc 7861668  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||||||||| || || |||| |||||||||||||||||||    
T  7861667 cttagctaactcatgagcaatctcatttgcttgcctccta 7861628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 34071270 - 34071402
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||    |||||||| | ||||||||||||||||||||    
T  34071270 gaaagtaaattatatcatttcattaaaaatcagatcagtaatacatgttggaatatcatcaaagacctagaagctagaactagatgtggctgccttagct 34071369  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    ||    |||||||||||||| | |||| |||||    
T  34071370 aaagtgtgtgcaacctcattcgtttgcttccta 34071402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 120 - 256
Target Start/End: Complemental strand, 31426617 - 31426481
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgc 219  Q
    |||||| ||| |||| ||||||||||||||||||||||| ||  |||||||||| || ||| |||||||| |   ||||||||||| |||||||||||||    
T  31426617 ttttagagaaggtaaattatatcatttcattaaaaattagattggtaatacatgctggaatatcatcaaacacctggaagctagtactagatgtggctgc 31426518  T
Q  220 cttagctaattcttgtgcaacctcatttgcttgcctc 256  Q
     |||| |||  | || |||||||||||||||||||||    
T  31426517 tttagttaaaacatgagcaacctcatttgcttgcctc 31426481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 127 - 259
Target Start/End: Complemental strand, 27072523 - 27072391
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    ||||| || ||||||||||||||||||||||| |||  |||||||||| | ||| |||||||| ||  ||||||||||| |||||| ||||||||| |||    
T  27072523 gaaagaaaattatatcatttcattaaaaattagatcgctaatacatgtaggaatatcatcaaaaatctggaagctagtactagatgcggctgccttggct 27072424  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    |     || ||||||||||||||||||||||||    
T  27072423 agagtgtgagcaacctcatttgcttgcctccta 27072391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 34819741 - 34819630
Alignment:
Q  120 ttttagggaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttg-aaatttcatcaaagatacggaagctagtattagatgtggctg 218  Q
    |||||||||| ||||||||||||||| |||| ||||||||||||| |||||||| || ||||||||||||||||  |||||||||   || |||||||||    
T  34819741 ttttagggaaggtaacttatatcatt-cattgaaaattaaatcagcaatacatgctgtaaatttcatcaaagatgtggaagctagggataaatgtggctg 34819643  T
Q  219 ccttagctaattc 231  Q
    |||||| ||||||    
T  34819642 ccttagttaattc 34819630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 20471328 - 20471205
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    |||||||||||||||||| |||| |  | |||||||||| | ||| ||||||||||   ||||||||||| |||||| ||||||||||||||     ||     
T  20471328 ttatatcatttcattaaagattagagaactaatacatgtaggaatatcatcaaagacctggaagctagtactagatgcggctgccttagctagagtatga 20471229  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  20471228 gcaacctcatttgcttgcctccta 20471205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 258 - 363
Target Start/End: Original strand, 21085070 - 21085175
Alignment:
Q  258 tacagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaa 357  Q
    |||| ||||||| || ||||||||| || ||| | || |  ||||||||||| ||||| |||||||||||||||||||||||||   |  ||||||||||    
T  21085070 tacaaaattggacactactatccataatagaaccgaactcggtgacatctccacgaccattgttgaaataatcagctactcttttagagtcaacctcgaa 21085169  T
Q  358 atcaac 363  Q
    ||||||    
T  21085170 atcaac 21085175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 31426441 - 31426360
Alignment:
Q  260 cagaattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactcttt 341  Q
    |||||||||| || ||| ||||| || ||  ||||||  ||||||||||| ||||| |||||||||||||||||||||||||    
T  31426441 cagaattggacactactgtccataatagagccaaattcggtgacatctccacgaccattgttgaaataatcagctactcttt 31426360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 378
Target Start/End: Complemental strand, 20471165 - 20471050
Alignment:
Q  263 aattggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaa 362  Q
    |||||||||| | ||||||| |||||| | ||||  |||| ||||||  | |||||||||||||| |||||||||||||   |  |||||||||||||||    
T  20471165 aattggatactattatccataatggaaccgaattcggtgatatctccatggcctttgttgaaatagtcagctactcttttagagtcaacctcgaaatcaa 20471066  T
Q  363 cgttagcaagttgaag 378  Q
    | ||||  ||||||||    
T  20471065 cattagttagttgaag 20471050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 378
Target Start/End: Original strand, 34071445 - 34071556
Alignment:
Q  266 tggatacaactatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaacgt 365  Q
    ||||||| |||||| || || ||| ||||||  ||||||||||| | ||| |||||||| ||||||||||||||||   |  |||||||||||||||| |    
T  34071445 tggataccactatctataattgaaccaaattcggtgacatctcc-caaccattgttgaagtaatcagctactcttttagagtcaacctcgaaatcaacat 34071543  T
Q  366 tagcaagttgaag 378  Q
    |||  ||||||||    
T  34071544 tagtgagttgaag 34071556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 257
Target Start/End: Complemental strand, 26370532 - 26370489
Alignment:
Q  214 ggctgccttagctaattcttgtgcaacctcatttgcttgcctcc 257  Q
    |||||||||||||||||  || ||||||||||||||||||||||    
T  26370532 ggctgccttagctaatttatgagcaacctcatttgcttgcctcc 26370489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 27072300 - 27072251
Alignment:
Q  314 cctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  27072300 cctttgttgaaataatcagctactcttttagagtcaacctcgaaatcaac 27072251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 127 - 259
Target Start/End: Original strand, 234619 - 234751
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagct 226  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||  | ||| |||||||||||  ||||||||||| ||||||||| |||| |||||    
T  234619 gaaagtgaattatatcatttcattaaaaatcaaatcagtaatacatgcaggaatatcatcaaagatctggaagctagtactagatgtggatgccctagct 234718  T
Q  227 aattcttgtgcaacctcatttgcttgcctccta 259  Q
    | |   |||||||||||||| | ||||||||||    
T  234719 agtgtatgtgcaacctcattcgtttgcctccta 234751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 11447 - 11570
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| || || | |||||||||||  || ||||||||||   ||||||||||| || |||||||||||||||||||    ||     
T  11447 ttatatcatttcattaaaaatcaagtcggaaatacatgttgggatatcatcaaagacctggaagctagtactacatgtggctgccttagctaaagtatga 11546  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  11547 gcaacctcatttgcttgcctccta 11570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 11646 - 11710
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||| | |||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  11646 gtgacatctccactacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaac 11710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 1065 - 942
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgt 235  Q
    ||||||||||||||||||||| ||||  | |||||||| || ||| ||||||||||   |||| |||||| || |||||||||||||||||||    ||     
T  1065 ttatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagacttggaaactagtactacatgtggctgccttagctaaggtatga 966  T
Q  236 gcaacctcatttgcttgcctccta 259  Q
    ||||||||||||||||||||||||    
T  965 gcaacctcatttgcttgcctccta 942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1689; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 276 - 359
Target Start/End: Complemental strand, 889 - 806
Alignment:
Q  276 tatccatgatggaaacaaatttagtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaat 359  Q
    ||||||| |||||| |||| |  ||||||||||| ||||||||||||||||||| |||||||||||   || ||||||||||||    
T  889 tatccataatggaaccaaactcggtgacatctccacgacctttgttgaaataattagctactctttttgaatcaacctcgaaat 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 215606 - 215522
Alignment:
Q  127 gaaagtaacttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagat 211  Q
    |||| ||||||||||||||||| ||||||| | ||||||||||||||||| ||| |||||||||| | ||||||||||| |||||    
T  215606 gaaaataacttatatcatttcactaaaaatcagatcagtaatacatgttggaatatcatcaaagacatggaagctagtactagat 215522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 14381 - 14492
Alignment:
Q  148 attaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaattcttgtgcaacctcattt 247  Q
    ||||||||| | ||| ||||||||||||| ||| |||| |||||||  |||| ||||| ||||||||  || |||||||||    |||||||||||||||    
T  14381 attaaaaatcagatccgtaatacatgttggaatatcattaaagatattgaagttagtactagatgtgattgtcttagctaaagtatgtgcaacctcattt 14480  T
Q  248 gcttgcctccta 259  Q
    ||||||||||||    
T  14481 gcttgcctccta 14492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 13936 - 14028
Alignment:
Q  136 ttatatcatttcattaaaaattaaatcagtaatacatgttgaaatttcatcaaagatacggaagctagtattagatgtggctgccttagctaa 228  Q
    ||||||||||||||||||||| ||||  | |||||||| || ||| ||||||||||    |||||||||| || |||||||||||||||||||    
T  13936 ttatatcatttcattaaaaatcaaattggaaatacatgctggaatatcatcaaagactttgaagctagtactacatgtggctgccttagctaa 14028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 299 - 363
Target Start/End: Original strand, 14137 - 14201
Alignment:
Q  299 gtgacatctcctcgacctttgttgaaataatcagctactctttccaaagcaacctcgaaatcaac 363  Q
    ||||||||||| |||||||||||||||||||||||||||||||   |  ||||||||||||||||    
T  14137 gtgacatctccacgacctttgttgaaataatcagctactctttttgagtcaacctcgaaatcaac 14201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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