View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_12 (Length: 394)
Name: NF8385_low_12
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 40490195 - 40490002
Alignment:
| Q |
16 |
aggaagagagttgtaatttgcatgtgaaatgtttgttagttattttggattgaagagcgcagataacatgttaaatgatctaagacggtcaagatcaaat |
115 |
Q |
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| T |
40490195 |
aggaagagagtagcaatttgcatgtgaaatgtttgttagttattttggattgaagagcgcagataacatgttaaatgatctaagaccgtcaagatcaaat |
40490096 |
T |
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| Q |
116 |
accatatttcagtccaannnnnnnnnnnnnnnaagggttcagtccaaaattttaagatgttggaaatatgaatgtcacattacttatagggttaaat |
212 |
Q |
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| T |
40490095 |
accatatttcagtccaa---ttattttttttgaagggttcagtccaaaattttaaaatgttgggaatatgaatgtcacatttcttatagggttaaat |
40490002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 40489763 - 40489639
Alignment:
| Q |
241 |
actttttattttagtaacaagactcttgtcgaggagtataagggagtgtcaaaacaacacgttcataaattcaggaacatcatgtcatgtatcaaaaacg |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
40489763 |
actttttattttagtaacaagactcttgtcgaggagtacaagggagtgtcaaaacaacacgttcataaattcagtaacatcatgtcatgtattaaaaacg |
40489664 |
T |
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| Q |
341 |
agttcctaggccgtgtagttaatta |
365 |
Q |
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| T |
40489663 |
agttcctaggccgtgtagttaatta |
40489639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 13955776 - 13955748
Alignment:
| Q |
227 |
ctataaatatttcaactttttattttagt |
255 |
Q |
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| T |
13955776 |
ctataaatatttcaactttttattttagt |
13955748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 32825212 - 32825184
Alignment:
| Q |
227 |
ctataaatatttcaactttttattttagt |
255 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32825212 |
ctataaatatttcaactttttattttagt |
32825184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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