View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_2 (Length: 733)
Name: NF8385_low_2
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 622; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 19 - 720
Target Start/End: Original strand, 34819461 - 34820162
Alignment:
| Q |
19 |
attaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattccttcaac |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819461 |
attaagctccaagcacttggcttcaacatctcgcttatcttcctcgactttctttttctcatcctttgtcgtctttaaggagttgcgagattccttcaac |
34819560 |
T |
|
| Q |
119 |
tggtcctccaaggttttaacccttaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctccatcactt |
218 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34819561 |
tggtcctccaaggttttaaccctcaacttcaagtcttcgttctcctgctttagcctatctgcattcgattttacagcctgaaacttttcctccatcactt |
34819660 |
T |
|
| Q |
219 |
caagcaacaccacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttacgtcaaaatcttcataaaggttgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
34819661 |
caagcaacaccacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttgcctcaaaatcttcataaaggttgaa |
34819760 |
T |
|
| Q |
319 |
atgatccttcacgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcg |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34819761 |
atgatccttcacgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcg |
34819860 |
T |
|
| Q |
419 |
ccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttt |
518 |
Q |
| |
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|||| || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |
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| T |
34819861 |
cctttatcactcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttt |
34819960 |
T |
|
| Q |
519 |
tggtgatactctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttccttt |
618 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
34819961 |
tggtgatactctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattccttt |
34820060 |
T |
|
| Q |
619 |
atgttcttggcagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctttatcactcttccctttcttc |
718 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34820061 |
atgttcttggcagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctttatcactcttccctttcttc |
34820160 |
T |
|
| Q |
719 |
tt |
720 |
Q |
| |
|
|| |
|
|
| T |
34820161 |
tt |
34820162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 401 - 543
Target Start/End: Original strand, 34820119 - 34820261
Alignment:
| Q |
401 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcat |
500 |
Q |
| |
|
||||||||| | | |||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| |||| ||||| |
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|
| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatg |
34820218 |
T |
|
| Q |
501 |
acataccaacatcatttttggtgatactctcgtcaataaaact |
543 |
Q |
| |
|
|| ||||||||| |||||| ||||| |||||||||| |||||| |
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| T |
34820219 |
acgtaccaacattattttttgtgatgctctcgtcaacaaaact |
34820261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
| Q |
461 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
543 |
Q |
| |
|
||||| |||||||||| || | ||| |||||||||||| ||||||| |||||| |||| |||||||| ||||||| |||||| |
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|
| T |
34820530 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact |
34820612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 461 - 542
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
| Q |
461 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac |
542 |
Q |
| |
|
|||||||||||||||| | | ||| |||| ||||||| || |||||| ||||||||| |||||||||||||||| ||||| |
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|
| T |
34820296 |
gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
34820377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 467 - 543
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
| Q |
467 |
tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
543 |
Q |
| |
|
||||||| || || ||||| |||| ||||||| || |||||| ||||||||| |||||||||||||||| |||||| |
|
|
| T |
34820653 |
tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact |
34820729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 603 - 667
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
| Q |
603 |
ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata |
667 |
Q |
| |
|
|||||||| ||||||||||||| || || |||||||||||||| || || | ||||||||||||| |
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|
| T |
34835101 |
ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata |
34835165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 504 - 543
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
| Q |
504 |
taccaacatcatttttggtgatactctcgtcaataaaact |
543 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| |
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|
| T |
34820807 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
34820846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 461 - 543
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
| Q |
461 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
543 |
Q |
| |
|
||||| |||||||||| || | ||| |||||||||||| | |||||||||||||||| ||| ||||||||||| |||||| |
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|
| T |
34820413 |
gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
34820495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 184 - 338
Target Start/End: Original strand, 22080589 - 22080743
Alignment:
| Q |
184 |
cgattttacagcctgaaacttttcctccatcacttcaagcaacaccacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagac |
283 |
Q |
| |
|
|||||||||||||| ||| | |||||||||||||||||||||||| | ||| |||| |||||||||| | ||||| |||||| || | ||||||||| |
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| T |
22080589 |
cgattttacagcctaaaaatcttcctccatcacttcaagcaacactatagaacgcagacaagaaacaatggcatctcgaaacaagctgaaatgattagac |
22080688 |
T |
|
| Q |
284 |
ttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccag |
338 |
Q |
| |
|
||||| | | | |||||||| ||| ||||||||||||||| ||||||||||||| |
|
|
| T |
22080689 |
ttcctcgctgcctcaaaatcctcaggaaggttgaaatgatctttcacgaagccag |
22080743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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