View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_21 (Length: 312)
Name: NF8385_low_21
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28451154 - 28451263
Alignment:
| Q |
1 |
ttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttcatgaaccacttgatgctttgctaagtctaatg |
100 |
Q |
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| T |
28451154 |
ttccaacttatctatgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttcatgagccacttgatgctttgctaagtctaatg |
28451253 |
T |
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| Q |
101 |
catacttact |
110 |
Q |
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|||||||||| |
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| T |
28451254 |
catacttact |
28451263 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 11352558 - 11352639
Alignment:
| Q |
15 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttactttttc-atgaaccacttgatgctttgctaagtc |
95 |
Q |
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| T |
11352558 |
tgtttacttgatctcttaggaaatggaaacgtgtctcaatgtgtttacttcttcgatgaacaattggatgcttggctaagtc |
11352639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 24725121 - 24725262
Alignment:
| Q |
15 |
tgtttacttgatccctaagaaaatagaaacatgtctcaatgtgtttact-ttttcatgaaccacttgatgctttgctaagtctaatgcatacttactatc |
113 |
Q |
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| T |
24725121 |
tgtttacttgatccctaaggaaatgaaaacatgtctcattgtgcttactcctaccataagtcactggatgcttagcccagtctatagcagactttctatc |
24725220 |
T |
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| Q |
114 |
aattagcaattacatcttctcaacttcctttagattcatttc |
155 |
Q |
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| T |
24725221 |
aatcaaaaattccatcttctcctcttcctttagattcatttc |
24725262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 12748922 - 12748986
Alignment:
| Q |
109 |
ctatcaattagcaattacatcttctcaacttcctttagattcatttccaacataagcatgttgat |
173 |
Q |
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| T |
12748922 |
ctatcaattagtaattccatcttctcttcttcttctagcttcatttctagcataagcatgttgat |
12748986 |
T |
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