View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_24 (Length: 261)

Name: NF8385_low_24
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_24
NF8385_low_24
[»] chr1 (1 HSPs)
chr1 (1-247)||(28450925-28451158)
[»] chr4 (1 HSPs)
chr4 (3-177)||(21080605-21080783)
[»] chr5 (1 HSPs)
chr5 (110-182)||(9507493-9507566)
[»] chr3 (2 HSPs)
chr3 (108-182)||(27237130-27237205)
chr3 (110-182)||(32813406-32813479)
[»] chr2 (1 HSPs)
chr2 (110-177)||(45485996-45486064)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 28450925 - 28451158
Alignment:
Q  1 aacttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatgctaactaattaactgaat 100  Q
    ||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28450925 aacttaacaaacttcaacaaaattttgtaaccaactta-------------acaagtaaactccttaactcataaaatcatgctaactaattaactgaat 28451011  T
Q  101 taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28451012 taacttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgctcgtctttagagacttggt 28451111  T
Q  201 taacaaatatgcaatcgattcttctatcttgcgatgcttgatgtcca 247  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28451112 taacaaatatgcaatcgattcttctatcttgcgatgcttgatttcca 28451158  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 177
Target Start/End: Original strand, 21080605 - 21080783
Alignment:
Q  3 cttaacaaacttcaacaaaattttgtaaccaacttagtttacttgttcaacaagtaaactccttaactcataaaatcatg------ctaactaattaact 96  Q
    |||||||||||||||||||||||  |||| |||| ||||||||||||||||||||||   ||||||||  |||  || ||      ||||||||  ||||    
T  21080605 cttaacaaacttcaacaaaatttc-taactaactgagtttacttgttcaacaagtaactcccttaacttctaa--tcttgaactaactaactaaccaact 21080701  T
Q  97 gaatta--acttcctaatacacctccttaattcattagttagtgacttcaaccattcctagattgttcctcaagtattcaaag 177  Q
    ||||||  ||  ||||| ||||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||| ||||    
T  21080702 gaattataacaccctaacacacctcct-aattcattagttagtgacttcaaccatgcctaacttgttcctcaagtattaaaag 21080783  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 9507566 - 9507493
Alignment:
Q  110 aatacacctccttaattcatt-agttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||||| ||||||   |||||||||||||||  || ||| ||||||| |||||||||||    
T  9507566 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagttgct 9507493  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 182
Target Start/End: Complemental strand, 27237205 - 27237130
Alignment:
Q  108 ctaatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||||| ||||||||   ||||| |||||||||  || ||| ||||||| |||||||||||    
T  27237205 ctaatacacctccttaattcatttagttagatgcttcagccattcctaacttcttcttcaagtaatcaaagttgct 27237130  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 32813479 - 32813406
Alignment:
Q  110 aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaagttgct 182  Q
    ||||||||||||||||||| ||||||||   |||||||||||||||  || ||| ||||||| |||||| ||||    
T  32813479 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaagctgct 32813406  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 45485996 - 45486064
Alignment:
Q  110 aatacacctccttaattca-ttagttagtgacttcaaccattcctagattgttcctcaagtattcaaag 177  Q
    ||||||||||||||||||| ||||||||   |||||||||||||||  || ||| ||||||| ||||||    
T  45485996 aatacacctccttaattcatttagttagatgcttcaaccattcctaacttcttcttcaagtaatcaaag 45486064  T

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