View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_25 (Length: 255)

Name: NF8385_low_25
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_25
NF8385_low_25
[»] chr3 (39 HSPs)
chr3 (18-238)||(10431010-10431230)
chr3 (18-238)||(10034883-10035103)
chr3 (18-238)||(10520365-10520585)
chr3 (18-238)||(10129802-10130022)
chr3 (18-238)||(9841738-9841958)
chr3 (18-214)||(9980346-9980542)
chr3 (18-202)||(10263581-10263765)
chr3 (18-191)||(10583393-10583566)
chr3 (18-238)||(11778951-11779171)
chr3 (18-238)||(11772114-11772334)
chr3 (18-238)||(10360770-10360990)
chr3 (100-238)||(10666497-10666635)
chr3 (93-238)||(9852832-9852977)
chr3 (18-140)||(10503462-10503584)
chr3 (18-145)||(9852619-9852746)
chr3 (16-134)||(10091666-10091784)
chr3 (16-134)||(10198548-10198666)
chr3 (18-199)||(10086056-10086236)
chr3 (18-199)||(10192976-10193156)
chr3 (18-133)||(10372916-10373031)
chr3 (93-202)||(10531736-10531845)
chr3 (93-202)||(10680534-10680643)
chr3 (100-200)||(10583544-10583644)
chr3 (19-191)||(10666347-10666519)
chr3 (93-191)||(10091950-10092048)
chr3 (93-191)||(10198832-10198930)
chr3 (83-178)||(10091871-10091966)
chr3 (83-178)||(10198753-10198848)
chr3 (153-204)||(10372914-10372965)
chr3 (18-87)||(13852563-13852632)
chr3 (153-203)||(10503666-10503716)
chr3 (21-70)||(10531664-10531713)
chr3 (93-131)||(10091812-10091850)
chr3 (93-131)||(10198694-10198732)
chr3 (28-70)||(10680469-10680511)
chr3 (32-66)||(10892212-10892246)
chr3 (32-66)||(11128158-11128192)
chr3 (32-66)||(11157149-11157183)
chr3 (30-66)||(8864190-8864226)
[»] scaffold0083 (1 HSPs)
scaffold0083 (18-214)||(54595-54791)
[»] chr2 (1 HSPs)
chr2 (18-200)||(26909768-26909950)
[»] chr8 (3 HSPs)
chr8 (18-202)||(44954665-44954849)
chr8 (18-145)||(11487909-11488036)
chr8 (153-204)||(11488114-11488165)
[»] chr4 (1 HSPs)
chr4 (19-203)||(17849927-17850111)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10431230 - 10431010
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  10431230 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaactctctgtttttggttttgtgatcaacttgagacattgccagaaaactgcc 10431131  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    |||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||   ||| |    
T  10431130 tcccttcctcgctgaaatcacttgatttgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagcaactgagaattag 10431031  T
Q  218 ggattgtccattgttagaaga 238  Q
    ||| |||||||||||||||||    
T  10431030 ggaatgtccattgttagaaga 10431010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10034883 - 10035103
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10034883 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaaactctctgtttttggaattgtcatcaacttgagacattgccagaaaactgcc 10034982  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    |||||||||||||||||| ||||  ||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||| | || | | ||||||    
T  10034983 tcccttcctcgctgaaatcacttagattgtgggattgtaaaaagcttgagtcattaccagaagacagcctcactgactctcttagggaactctgcatttg 10035082  T
Q  218 ggattgtccattgttagaaga 238  Q
    | |||| ||||||||||||||    
T  10035083 gaattgcccattgttagaaga 10035103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10520365 - 10520585
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||  |||| |||||||| ||||| | ||||||||||||||||||||||||||||    
T  10520365 atgaagtcctttgatggaaaagggcttcgtcacctctcctctctccaacgtctccgtttttgggattgtgaacaacttgagacattgccagaaaactgcc 10520464  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| | ||  ||||||    
T  10520465 tcccttcctcgctgaaattacttgatttgtggaaatgtgaaaagcttaaatcattaccagaagacagcctccctgactctctgaagagactgctcatttg 10520564  T
Q  218 ggattgtccattgttagaaga 238  Q
    ||| |||||||||||||||||    
T  10520565 ggaatgtccattgttagaaga 10520585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 10129802 - 10130022
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  10129802 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaacatctcttcttttggaattgtcatcaacttgagacattgccagaaaactgcc 10129901  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    |||||||||||||||||| |||| | || ||| | ||||||||||| ||||||||||||||||||||||||||||| ||||||| | || ||| ||||      
T  10129902 tcccttcctcgctgaaatcacttgacttttgggattgtgaaaagctagagtcattaccagaagacagcctccctgattctcttatgcaactgtgcattca 10130001  T
Q  218 ggattgtccattgttagaaga 238  Q
     |  |||||||||||||||||    
T  10130002 aggatgtccattgttagaaga 10130022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 9841738 - 9841958
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||| || |||||  || |||||| ||||||||||||||||||    
T  9841738 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaatatctcgatttttcgttttgtccacagcttgagtcattgccagaaaactgcc 9841837  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    |||||||||||||||||| ||||  |||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||    || |||||||    
T  9841838 tcccttcctcgctgaaatcacttatattgtttcaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttgagcgtctgaacatttg 9841937  T
Q  218 ggattgtccattgttagaaga 238  Q
    ||  |||||||||||||||||    
T  9841938 gggatgtccattgttagaaga 9841958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 9980346 - 9980542
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  9980346 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 9980445  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacat 214  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  9980446 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacat 9980542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 18 - 202
Target Start/End: Original strand, 10263581 - 10263765
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||  | |||||||||||||||||||||||||||||||||||    
T  10263581 atgaagtcctttgatggaaatgggcttcaacacctctcctctctccaatatctctgttttttcttttgtcatcaacttgagacattgccagaaaactgcc 10263680  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaa 202  Q
    |||||||||||||||||| ||||| ||||     |||||||||||| |||||||||||||||||||||||||||  |||||||||    
T  10263681 tcccttcctcgctgaaatcacttctattgcttggatgtgaaaagctagagtcattaccagaagacagcctcccttcctctcttaa 10263765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 10583393 - 10583566
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||    |||||||||||||||||||||||||||||||||||    
T  10583393 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaatatctctgttttttcatttgtcatcaacttgagacattgccagaaaactgcc 10583492  T
Q  118 tcccttcctcgctgaaattac-ttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||||||| ||||||| || |||| || ||| | ||||||||||||| |||||||||||||||||||||||||    
T  10583493 tcccttcctcactgaaatcactttcatttatgg-attgtgaaaagcttgggtcattaccagaagacagcctccct 10583566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 11779171 - 11778951
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11779171 atgaagtccttcgatggaaatgggcttcgacacctctcctctctcgaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11779072  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| |||||||||||| || ||  ||||||    
T  11779071 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttg 11778972  T
Q  218 ggattgtccattgttagaaga 238  Q
    ||  || ||||||||||||||    
T  11778971 gggatgcccattgttagaaga 11778951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 11772114 - 11772334
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||| || || ||| ||||||||||||||||||    
T  11772114 atgaagtcttttgatggaaatgggcttcgacacctctcctctctccaatatctctatttttggaattgtcaacagctcgagtcattgccagaaaactgcc 11772213  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacatttg 217  Q
    ||||||||||| |||||| ||||  |||    |  |||||  |||||||||||||||| |||||||||||||| |||||||||||| || ||  ||||||    
T  11772214 tcccttcctcgttgaaatcactttcatttcaaatgtgtgaggagcttgagtcattaccggaagacagcctccccgactctcttaagcaactgaccatttg 11772313  T
Q  218 ggattgtccattgttagaaga 238  Q
    ||  || ||||||||||||||    
T  11772314 gggatgcccattgttagaaga 11772334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 10360990 - 10360770
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctc-tgtttttggtattgtcatcaacttgagacattgccagaaaactgc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||| | ||||| | || |||  || |||||| |||| ||||||||||||    
T  10360990 atgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacatctcgtattttttgaat-gtcgacagcttgagtcattaccagaaaactgc 10360892  T
Q  117 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacattt 216  Q
    ||||||||||||||||||| ||||  ||| |     |||||||||||| | |||||||||||||||||||||||||||||||||||| || || |||| |    
T  10360891 ctcccttcctcgctgaaatcacttacattttatggttgtgaaaagcttaaatcattaccagaagacagcctccctgactctcttaaggaactggacatct 10360792  T
Q  217 gggattgtccattgttagaaga 238  Q
      ||||| ||||||||||||||    
T  10360791 atgattgcccattgttagaaga 10360770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 100 - 238
Target Start/End: Original strand, 10666497 - 10666635
Alignment:
Q  100 cattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 199  Q
    |||| |||||| || ||||||||||||||||||||| |||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10666497 cattaccagaagacagcctcccttcctcgctgaaatcacttgaattgtttgaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 10666596  T
Q  200 taagaaattgtacatttgggattgtccattgttagaaga 238  Q
    |||| || || |||||  ||| |||||||||||||||||    
T  10666597 taaggaactgcacattgaggaatgtccattgttagaaga 10666635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 9852832 - 9852977
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 192  Q
    |||||| |||| ||||||||||||||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9852832 cttgagtcattaccagaaaactgcctcccatcatcgctgaaatcacttgaattgtggaaatgtgaaaagctagagtcattaccagaagacagcctccctg 9852931  T
Q  193 actctcttaagaaattgtacatttgggattgtccattgttagaaga 238  Q
    |||| || |||| | || ||||||  |  |||||||||||||||||    
T  9852932 actcactgaagagactggacatttatggatgtccattgttagaaga 9852977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 10503462 - 10503584
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggt-attgtcatcaacttgagacattgccagaaaactgc 116  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||  |||  | ||||||  || |||||| |||||||||||||||||    
T  10503462 atgaagtcctttgatggaaatgggcttcgacaaatctcctctctcgaaaatct-tgaatttcttaattgtctacagcttgagtcattgccagaaaactgc 10503560  T
Q  117 ctcccttcctcgctgaaattactt 140  Q
    ||||||||||||||||||||||||    
T  10503561 ctcccttcctcgctgaaattactt 10503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 9852619 - 9852746
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || |||||| ||||  |  |||||| || |||| | |||||||||||||||||     
T  9852619 atgaagtcctttgatggaaatgggcttcgacacctcttctctctccaatatctctattttgcgggttgtcaacagcttgggtcattgccagaaaactgct 9852718  T
Q  118 tcccttcctcgctgaaattacttcaatt 145  Q
    |||||||||| ||||||| |||| ||||    
T  9852719 tcccttcctcactgaaatcacttaaatt 9852746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 10091666 - 10091784
Alignment:
Q  16 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10091666 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10091765  T
Q  116 cctcccttcctcgctgaaa 134  Q
    |||||||||||||||||||    
T  10091766 cctcccttcctcgctgaaa 10091784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 10198548 - 10198666
Alignment:
Q  16 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||  ||| ||  | ||||  || ||| || ||||||||||||||||    
T  10198548 agatgaagtcctttgatggaaatgggcttcgacacctctcctctctccaacgtctcgatttctgtcaatgtcgacagcttcagtcattgccagaaaactg 10198647  T
Q  116 cctcccttcctcgctgaaa 134  Q
    |||||||||||||||||||    
T  10198648 cctcccttcctcgctgaaa 10198666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 10086056 - 10086236
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10086056 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10086154  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 199  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| |||||||||| |||||    
T  10086155 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctct 10086236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 10192976 - 10193156
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||| |||    ||| |  ||||||| ||||||||| |||| || ||||| |||     
T  10192976 atgaagtcctttgatggaaatgggcttcaacacctctcctttctcgaaa-tcttcactttcgtaattgtcaacaacttgagccatttcctgaaaattgcg 10193074  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctct 199  Q
    | |||||||||||||||| |||| || | ||||  |||||||  ||||| |||||||| |||||| |||||||||| |||||    
T  10193075 ttccttcctcgctgaaatcacttgaaatttggagttgtgaaagacttgaatcattaccggaagactgcctccctgattctct 10193156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 10373031 - 10372916
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||   ||||| |  | |||||| |||| |||||| || |||    
T  10373031 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcaaaaatctctatttttttaattgtgaaaagcttgagtcattaccagaagacagcc 10372932  T
Q  118 tcccttcctcgctgaa 133  Q
    |||||||||| |||||    
T  10372931 tcccttcctctctgaa 10372916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 10531736 - 10531845
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 192  Q
    |||||| ||||||||||||| |||||||||||||||||||| | ||||||||| | ||  |||| ||  ||||||||||||||||||||||||||||||     
T  10531736 cttgagtcattgccagaaaattgcctcccttcctcgctgaagtcacttcaattttcgagttgtgtaagacttgagtcattaccagaagacagcctccctt 10531835  T
Q  193 actctcttaa 202  Q
     |||||||||    
T  10531836 cctctcttaa 10531845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 10680534 - 10680643
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctg 192  Q
    |||||| |||| |||||||| |||||||||||||||||||||| ||||||||| | ||  |||| ||  |||||||  |||||||||||||||||||||     
T  10680534 cttgagtcatttccagaaaattgcctcccttcctcgctgaaatcacttcaatttttgagttgtgtaagacttgagttgttaccagaagacagcctccctt 10680633  T
Q  193 actctcttaa 202  Q
     |||||||||    
T  10680634 cctctcttaa 10680643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 10583544 - 10583644
Alignment:
Q  100 cattgccagaaaactgcctcccttcctcgctgaaattacttcaatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctc 198  Q
    |||| |||||| || ||||||||||||||||||||| ||||||||| ||||   |||| ||  || ||||||||||||||||||||||||||||||||||    
T  10583544 cattaccagaagacagcctcccttcctcgctgaaatcacttcaatttgtgggt-tgtgtaagactcgagtcattaccagaagacagcctccctgactctc 10583642  T
Q  199 tt 200  Q
    ||    
T  10583643 tt 10583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 10666347 - 10666519
Alignment:
Q  19 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttg-gtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||  ||| ||  |||| ||||||||| || || ||| |||| |||||||||| ||    
T  10666347 tgaagtcctttaatggaaatgggcttctacacctctcctctctcaaacgtct-tgaatttgagtattgtcaacagctggagtcattaccagaaaactacc 10666445  T
Q  118 tcccttcctcgctgaaattactt-caatt-gtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    ||||||| || ||||||  |||| ||||| |||  | ||| |  ||||| ||||||||||||||||||||||||||    
T  10666446 tcccttcatctctgaaagaacttacaattcgtg--attgtaagcagcttaagtcattaccagaagacagcctccct 10666519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10091950 - 10092048
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||    
T  10091950 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccct 10092048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 191
Target Start/End: Original strand, 10198832 - 10198930
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccct 191  Q
    |||||| |||| ||||| ||||||||||| ||||||||||||| ||||  |||| |  | ||| ||| |||||| ||||||||||||||||||||||||    
T  10198832 cttgagtcatttccagacaactgcctcccgtcctcgctgaaatcacttagattgagtgattgtaaaatgcttgattcattaccagaagacagcctccct 10198930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 10091871 - 10091966
Alignment:
Q  83 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 178  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10091871 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10091966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 178
Target Start/End: Original strand, 10198753 - 10198848
Alignment:
Q  83 ttgtcatcaacttgagacattgccagaaaactgcctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccaga 178  Q
    |||| |||| || ||| |||| |||||||||||||||||||  |||||||||| ||||| |||   ||| |||||||||||||||||||| |||||    
T  10198753 ttgtaatcatctggagtcattaccagaaaactgcctccctttgtcgctgaaatcacttcgatttgcgaattgtgaaaagcttgagtcatttccaga 10198848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 10372965 - 10372914
Alignment:
Q  153 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaaga 204  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  10372965 tgtgaaaagcttgagtcattaccagaagacagcctcccttcctctctgaaga 10372914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 13852632 - 13852563
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtc 87  Q
    |||||||| || |||||||||||||||||||| |||||||||||| | |||||| | |||||| ||||||    
T  13852632 atgaagtctttcgatggaaatgggcttcgacatctctcctctctcaacaatctcggattttggaattgtc 13852563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 203
Target Start/End: Original strand, 10503666 - 10503716
Alignment:
Q  153 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaag 203  Q
    |||||||||||| | |||||||||||||||||||| ||||| |||||||||    
T  10503666 tgtgaaaagctttactcattaccagaagacagccttcctgattctcttaag 10503716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 10531664 - 10531713
Alignment:
Q  21 aagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatct 70  Q
    ||||| ||||| |||||||| ||||||||||||||||||||| |||||||    
T  10531664 aagtcatttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10531713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 10091812 - 10091850
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctg 131  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10091812 cttgagtcattgccagaaaactgtctcccttcctcgctg 10091850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Original strand, 10198694 - 10198732
Alignment:
Q  93 cttgagacattgccagaaaactgcctcccttcctcgctg 131  Q
    |||||| |||||||||||||||| |||||||||||||||    
T  10198694 cttgagtcattgccagaaaactgtctcccttcctcgctg 10198732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 70
Target Start/End: Original strand, 10680469 - 10680511
Alignment:
Q  28 ttgatggaaatgggcttcgacacctctcctctctcgaaaatct 70  Q
    |||| |||||||| ||||||||||||||||||||| |||||||    
T  10680469 ttgaaggaaatggacttcgacacctctcctctctcaaaaatct 10680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 10892212 - 10892246
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  10892212 tggaaatgggcttcgacacctctcctctctggaaa 10892246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 11128192 - 11128158
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  11128192 tggaaatgggcttcgacacctctcctctcttgaaa 11128158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 11157183 - 11157149
Alignment:
Q  32 tggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||||||||||||||| ||||    
T  11157183 tggaaatgggcttcgacacctctcctctctggaaa 11157149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 8864190 - 8864226
Alignment:
Q  30 gatggaaatgggcttcgacacctctcctctctcgaaa 66  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  8864190 gatggaaatgggcttcgatacctctcctctctggaaa 8864226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 54791 - 54595
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||| || |||||| ||||||||||||||||||||||||||||    
T  54791 atgaagtcctttgatggaaatgggctgcgacacctctcctctctccaaagtctctgttttttgttttgtcaacaacttgagacattgccagaaaactgcc 54692  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaagaaattgtacat 214  Q
    |||||||||||||||||| |||| |||| |   | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||| || |||||||    
T  54691 tcccttcctcgctgaaatcacttgaattttatgattgtaaaaagctagagtcattaccagaagacagcctccctgaatctcttaaggaactgtacat 54595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 26909768 - 26909950
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||    |||    ||||| | |||||  || |||| |||||||||||||    
T  26909768 atgaagtcctttgatggaaatgggcttcgacgcctctcctctctccaaaatcttcactttattaattgtgaacaactcaagtcatttccagaaaactgcc 26909867  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctctt 200  Q
    ||||||||||||||||||  |||||||| |     ||||| || ||||||||||||||||||||||||||||| |||||||||    
T  26909868 tcccttcctcgctgaaatatcttcaattttatggctgtgagaaacttgagtcattaccagaagacagcctccccgactctctt 26909950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 202
Target Start/End: Complemental strand, 44954849 - 44954665
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacct-ctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgc 116  Q
    |||||||||||| | ||||||||||||| |||||| |||||||||||||||||||   ||| |  | ||||| || |||||| |||| |||||||||||     
T  44954849 atgaagtcctttcaaggaaatgggcttcaacacctactcctctctcgaaaatctccactttcgtaactgtcaacagcttgagtcatttccagaaaactgt 44954750  T
Q  117 ctcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaa 202  Q
    || |||||||||||||||| ||||||||| | |   |||||| | |||||||| ||||||||||| ||||||||  ||||||||||    
T  44954749 cttccttcctcgctgaaatcacttcaatttttgttttgtgaaga-cttgagtcgttaccagaagaaagcctccccaactctcttaa 44954665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 11487909 - 11488036
Alignment:
Q  18 atgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtattgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||||| ||| |||||||| |||||||||| |||||||||||||| || |||| |  ||||||| | || | ||  ||||| |||| |||||||||| ||    
T  11487909 atgaagccctatgatggaagtgggcttcgatacctctcctctctcaaagatctttcattttggtgtagtgaacactttgagtcattaccagaaaacttcc 11488008  T
Q  118 tcccttcctcgctgaaattacttcaatt 145  Q
    |||| |||||||||| || |||| ||||    
T  11488009 tcccatcctcgctgatatcacttaaatt 11488036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 11488114 - 11488165
Alignment:
Q  153 tgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaaga 204  Q
    ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||    
T  11488114 tgtgaaaagcttgggtcattaccagtagaaaacctccctgactctcttaaga 11488165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 17850111 - 17849927
Alignment:
Q  19 tgaagtcctttgatggaaatgggcttcgacacctctcctctctcgaaaatctctgtttttggtat-tgtcatcaacttgagacattgccagaaaactgcc 117  Q
    |||| ||||||||||||||||| |||||||| || |||||||| |||| ||| ||  |||  ||  ||||| ||||||||| |||||||| |||||||||    
T  17850111 tgaactcctttgatggaaatggacttcgacatctttcctctcttgaaagtct-tgactttcttaactgtcaacaacttgagtcattgccacaaaactgcc 17850013  T
Q  118 tcccttcctcgctgaaattacttcaattgtggaaatgtgaaaagcttgagtcattaccagaagacagcctccctgactctcttaag 203  Q
    |||||||||| |||||||  ||| |||| ||  | ||| |||  |||||||| |||||||||||||||||||||  ||||||||||    
T  17850012 tcccttcctcactgaaatcgcttgaattttgttattgtaaaagacttgagtcgttaccagaagacagcctcccttcctctcttaag 17849927  T

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