View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_26 (Length: 249)

Name: NF8385_low_26
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_26
NF8385_low_26
[»] chr4 (13 HSPs)
chr4 (15-196)||(3816415-3816596)
chr4 (13-189)||(4024013-4024189)
chr4 (9-196)||(3808839-3809026)
chr4 (15-181)||(3934086-3934252)
chr4 (2-176)||(3956586-3956760)
chr4 (13-181)||(3985821-3985989)
chr4 (13-181)||(4217452-4217620)
chr4 (13-181)||(4001127-4001295)
chr4 (15-181)||(3920865-3921031)
chr4 (13-120)||(3800482-3800589)
chr4 (73-190)||(4008825-4008942)
chr4 (107-171)||(4017510-4017574)
chr4 (107-173)||(3964730-3964796)
[»] chr5 (1 HSPs)
chr5 (2-176)||(13396800-13396974)
[»] chr6 (4 HSPs)
chr6 (196-240)||(27682682-27682726)
chr6 (196-238)||(27690003-27690045)
chr6 (196-238)||(30230240-30230282)
chr6 (196-240)||(13143892-13143937)
[»] chr2 (2 HSPs)
chr2 (196-240)||(31712534-31712578)
chr2 (196-240)||(39156533-39156577)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 3816596 - 3816415
Alignment:
Q  15 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||    
T  3816596 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaagttttctgcaaagaatct 3816497  T
Q  115 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta 196  Q
    ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3816496 tgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta 3816415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 4024189 - 4024013
Alignment:
Q  13 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 112  Q
    ||||||||||||||||||||||||||||  || | ||| |||||||  |||||   | | |||||||||||||||||||||||| |||||| || |||||    
T  4024189 tcttcctcaagggcttcaatcttttccaactgatctaagatatctttcttggatgaattaccctctaaaatcattcccagagaagttttctgcaaagaat 4024090  T
Q  113 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttc 189  Q
    ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||| || |||||| |||||    
T  4024089 cttgttatattggacttgtcagatagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatatttctcttc 4024013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 3809026 - 3808839
Alignment:
Q  9 attgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcaga 108  Q
    |||||||||||||| || ||||||||||||||  |  | ||| ||||||||||||||  || || ||||||||||||||||||||||| |||||| ||||    
T  3809026 attgtcttcctcaaaggtttcaatcttttccaactaatctaagatatcttcattggatgtattgtcctctaaaatcattcccagagaacttttctgcaga 3808927  T
Q  109 gaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaatta 196  Q
    |||||||||||||||| ||||||   |||||  | | |||||||||||| ||||||||||||||||||||||  | ||||||||||||    
T  3808926 gaatcttgttatattgaacttgtatgatagtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaatta 3808839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 3934086 - 3934252
Alignment:
Q  15 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 114  Q
    |||||||||||||| |||||||||||  |||| | | |||||||||||||  ||  | |||||||||||||||||||||||| |||||| ||||||||||    
T  3934086 ttcctcaagggcttgaatcttttccaactggtcttagatatcttcattgggtatgttaccctctaaaatcattcccagagaagttttctgcagagaatct 3934185  T
Q  115 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 181  Q
    |||||||||||||||||    ||||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3934186 tgttatattggacttgtatcttagtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3934252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 3956586 - 3956760
Alignment:
Q  2 ggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt 101  Q
    ||||| ||| || ||||| ||||| ||||||||||||||  || | |||||||||||||||||| ||  | ||||||||||||| || ||||||| ||||    
T  3956586 ggtttggatcgtattcctgaagggattcaatcttttccaactgatctaaaatatcttcattggatatgttaccctctaaaatcactctcagagaagtttt 3956685  T
Q  102 cttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattg 176  Q
    || ||||||||||||||||||||||| |||||  ||| ||| | ||||| |||||||||||||||||| ||||||    
T  3956686 ctgcagagaatcttgttatattggacctgtcaggtagcctactggaaaaactttggtgtggagtgcagataattg 3956760  T

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Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 3985989 - 3985821
Alignment:
Q  13 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 112  Q
    ||||||||||||||||||| ||||||||  || | ||| |||||||||||||  | | | ||||||| | ||||| ||| |||| |||||| |||||||     
T  3985989 tcttcctcaagggcttcaaccttttccaactgatctaagatatcttcattgggtacattaccctctagagtcattgccaaagaagttttctgcagagaaa 3985890  T
Q  113 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 181  Q
    |||||||||||||||||||| ||||| ||| | |||||||||||||||||||| |||||||||| ||||    
T  3985889 cttgttatattggacttgtcgtatagcctagtagaaaagctttggtgtggagtacaggtaattgaatat 3985821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 4217620 - 4217452
Alignment:
Q  13 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 112  Q
    |||||||| |||||||||||||||||||  || | ||| |||||||| ||||  ||  | |||||||||||||||||||||||| |||||| ||||||||    
T  4217620 tcttcctcgagggcttcaatcttttccaaatgatctaagatatcttcgttgggtatgttaccctctaaaatcattcccagagaacttttctgcagagaat 4217521  T
Q  113 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 181  Q
    |||||||||||| |||||   ||||||  | | |||||||||||||||||||| |||||||||| ||||    
T  4217520 cttgttatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatat 4217452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 4001295 - 4001127
Alignment:
Q  13 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 112  Q
    |||||||||||||||||||||||| |||  || | ||| |||| ||  ||||| | | | ||||||||||||||||||| |||| ||||||  | |||||    
T  4001295 tcttcctcaagggcttcaatctttcccaactgatctaagatatatttgttggatacattaccctctaaaatcattcccaaagaagttttctggaaagaat 4001196  T
Q  113 cttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 181  Q
    ||||||||||||||||| ||| |||||| | | ||||| ||||||||||||||||||||||||| ||||    
T  4001195 cttgttatattggacttttcacatagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatat 4001127  T

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Target: chr4; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 3920865 - 3921031
Alignment:
Q  15 ttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaatct 114  Q
    |||||||||||||| |||||||||||  |||| ||| |||||||||||||| | | | |||||||||||||||| ||||||| |||| | | ||||||||    
T  3920865 ttcctcaagggcttgaatcttttccaactggtttaagatatcttcattggatagattaccctctaaaatcattctcagagaagttttttgctgagaatct 3920964  T
Q  115 tgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattggatat 181  Q
    |||||||||||||||||    | ||| | | |||||||| ||||||||||| |||||||||| ||||    
T  3920965 tgttatattggacttgtatcttggtcgaatggaaaagctatggtgtggagtacaggtaattgaatat 3921031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 120
Target Start/End: Complemental strand, 3800589 - 3800482
Alignment:
Q  13 tcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaatttttcttcagagaat 112  Q
    ||||||||||||||||||||||||||||  || | ||| ||||||||||||||   | | |||||||||||||||||||||||| |||||| || |||||    
T  3800589 tcttcctcaagggcttcaatcttttccaaatgatctaagatatcttcattggatgcattaccctctaaaatcattcccagagaagttttctgcaaagaat 3800490  T
Q  113 cttgttat 120  Q
    ||||||||    
T  3800489 cttgttat 3800482  T

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Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 4008942 - 4008825
Alignment:
Q  73 ccctctaaaatcattcccagagaatttttcttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggta 172  Q
    ||||||||||||||| ||| |||| |||||| | ||||||||||||||||| |||||||||| ||| | | | ||||||||||||| ||||||| |||||    
T  4008942 ccctctaaaatcattgccaaagaagttttctgcggagaatcttgttatatttgacttgtcatttagccaagtagaaaagctttggtatggagtgaaggta 4008843  T
Q  173 attggatatttatcttcc 190  Q
    ||||  ||| ||||||||    
T  4008842 attgactatgtatcttcc 4008825  T

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Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 4017574 - 4017510
Alignment:
Q  107 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggt 171  Q
    ||||| || ||||||||||||||||||||||||| | |||||||||| |||  ||||||||||||    
T  4017574 gagaaactcgttatattggacttgtcatatagtcgagttgaaaagctctggcatggagtgcaggt 4017510  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 3964730 - 3964796
Alignment:
Q  107 gagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaa 173  Q
    ||||| || ||||||||||||||||||||||||| | ||||||| || |||  ||||||||||||||    
T  3964730 gagaaactcgttatattggacttgtcatatagtcgagttgaaaaactctggcatggagtgcaggtaa 3964796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 2 - 176
Target Start/End: Complemental strand, 13396974 - 13396800
Alignment:
Q  2 ggttttgattgtcttcctcaagggcttcaatcttttccacttggtataaaatatcttcattggacatactgccctctaaaatcattcccagagaattttt 101  Q
    ||||| ||| ||||||||||||||||||||| |||||||  || | ||| ||||||| ||||||   | | |||||||||||||||||||||||| ||||    
T  13396974 ggtttggatcgtcttcctcaagggcttcaattttttccaactgatctaagatatctttattggatgcattaccctctaaaatcattcccagagaagtttt 13396875  T
Q  102 cttcagagaatcttgttatattggacttgtcatatagtctatttgaaaagctttggtgtggagtgcaggtaattg 176  Q
    ||   || |||||||||||| ||| |||| ||||||| ||  | |||||||||||||||||||| ||||||||||    
T  13396874 ctgttgataatcttgttatactgggcttgccatatagccttgtagaaaagctttggtgtggagtacaggtaattg 13396800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 27682682 - 27682726
Alignment:
Q  196 ataacacttccctcattctttctcttcctcccgtagctctctctg 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  27682682 ataacacttccctcattctttcttttcctcccgtagctctctctg 27682726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 27690003 - 27690045
Alignment:
Q  196 ataacacttccctcattctttctcttcctcccgtagctctctc 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  27690003 ataacacttccctcattctttcttttcctcccgtagctctctc 27690045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 30230282 - 30230240
Alignment:
Q  196 ataacacttccctcattctttctcttcctcccgtagctctctc 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  30230282 ataacacttccctcattctttcttttcctcccgtagctctctc 30230240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 13143937 - 13143892
Alignment:
Q  196 ataacacttccctcatt-ctttctcttcctcccgtagctctctctg 240  Q
    ||||||||| ||||||| |||||| |||||||||||||||||||||    
T  13143937 ataacactttcctcatttctttcttttcctcccgtagctctctctg 13143892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 31712534 - 31712578
Alignment:
Q  196 ataacacttccctcattctttctcttcctcccgtagctctctctg 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  31712534 ataacacttccctcattctttcttttcctcccgtagctctctctg 31712578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 39156577 - 39156533
Alignment:
Q  196 ataacacttccctcattctttctcttcctcccgtagctctctctg 240  Q
    ||||||||||||||||||||||| |||||||||||||||||||||    
T  39156577 ataacacttccctcattctttcttttcctcccgtagctctctctg 39156533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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