View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8385_low_27 (Length: 249)
Name: NF8385_low_27
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34216725 - 34216951
Alignment:
| Q |
1 |
taggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttctta |
100 |
Q |
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| T |
34216725 |
taggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttctta |
34216824 |
T |
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| Q |
101 |
tggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatcagacaaatagttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34216825 |
tggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcggatcagacaaatagttgg |
34216924 |
T |
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| Q |
201 |
caacttttctttgtcggacctgcagac |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34216925 |
caacttttctttgtcggacctgcagac |
34216951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 34194851 - 34194638
Alignment:
| Q |
1 |
taggttcatggaatggaagaattttatcaggaattccttctgagacactttacaaagcctataacttttcatttgtgattactgagaaggaaatttctta |
100 |
Q |
| |
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|||||||||||||||||| ||||||| ||||| ||||| ||| ||||||||| ||| || ||||||||||||||||||| |||||| ||||||| |
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| T |
34194851 |
taggttcatggaatggaaattttttatccggaatctcttctacgacgctttacaaatccttcaatatttcatttgtgattactgaaaaggaagtttctta |
34194752 |
T |
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| Q |
101 |
tggatatgaacttttgaacaagtctgttgtttcaagatacttggtatcttcaactggtcaaatagcgcgatacatgttgtcgaatcagacaaatagttgg |
200 |
Q |
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|||||||||||||||| ||||||| |||||||||| ||| || || || ||| |||||| || |||| ||||||||||| |||||||||| |||||| |
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| T |
34194751 |
tggatatgaacttttggacaagtccattgtttcaaggtacatgctaactccaatcggtcaagtatcgcgttacatgttgtccgatcagacaaagagttgg |
34194652 |
T |
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| Q |
201 |
caacttttctttgt |
214 |
Q |
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|||||| ||||||| |
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| T |
34194651 |
caacttgtctttgt |
34194638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 34205378 - 34205415
Alignment:
| Q |
79 |
ttactgagaaggaaatttcttatggatatgaacttttg |
116 |
Q |
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||||||||| |||| ||||||||||||||||||||||| |
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| T |
34205378 |
ttactgagacggaagtttcttatggatatgaacttttg |
34205415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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