View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_29 (Length: 240)

Name: NF8385_low_29
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_29
NF8385_low_29
[»] chr6 (12 HSPs)
chr6 (1-152)||(17436008-17436159)
chr6 (33-125)||(35060882-35060974)
chr6 (45-125)||(31522534-31522614)
chr6 (50-124)||(23608427-23608501)
chr6 (46-125)||(32275771-32275850)
chr6 (46-124)||(14153354-14153432)
chr6 (122-152)||(3101148-3101178)
chr6 (122-152)||(8770540-8770570)
chr6 (50-124)||(14430944-14431018)
chr6 (79-113)||(25400844-25400878)
chr6 (122-155)||(11172755-11172788)
chr6 (123-152)||(31834023-31834052)
[»] chr1 (27 HSPs)
chr1 (1-126)||(28442920-28443045)
chr1 (15-129)||(33403095-33403209)
chr1 (1-124)||(49033686-49033808)
chr1 (51-125)||(3792559-3792633)
chr1 (15-97)||(35577493-35577575)
chr1 (20-97)||(48025583-48025660)
chr1 (24-126)||(11821158-11821260)
chr1 (51-124)||(45691053-45691126)
chr1 (52-124)||(45691196-45691268)
chr1 (52-124)||(45691338-45691410)
chr1 (50-125)||(2094366-2094441)
chr1 (46-125)||(39650195-39650274)
chr1 (51-124)||(45688308-45688381)
chr1 (46-126)||(28446530-28446610)
chr1 (16-124)||(50069204-50069312)
chr1 (51-124)||(3792458-3792532)
chr1 (46-124)||(28475982-28476060)
chr1 (1-106)||(17696188-17696293)
chr1 (51-124)||(28474792-28474865)
chr1 (16-97)||(47488997-47489078)
chr1 (122-152)||(14795532-14795562)
chr1 (122-152)||(14804406-14804436)
chr1 (122-152)||(19585033-19585063)
chr1 (122-152)||(31200551-31200581)
chr1 (46-124)||(33401408-33401486)
chr1 (122-152)||(50049905-50049935)
chr1 (122-152)||(51251230-51251260)
[»] chr8 (22 HSPs)
chr8 (1-124)||(23558938-23559061)
chr8 (15-125)||(34276191-34276301)
chr8 (24-123)||(9384617-9384716)
chr8 (24-126)||(43640951-43641053)
chr8 (45-126)||(33220786-33220867)
chr8 (16-97)||(33800468-33800549)
chr8 (46-125)||(43635129-43635208)
chr8 (60-126)||(37687326-37687392)
chr8 (77-129)||(9418582-9418634)
chr8 (65-125)||(4640814-4640874)
chr8 (46-124)||(5967237-5967315)
chr8 (79-126)||(33220022-33220068)
chr8 (122-152)||(232080-232110)
chr8 (122-152)||(708491-708521)
chr8 (122-152)||(745703-745733)
chr8 (122-152)||(869598-869628)
chr8 (79-125)||(31762240-31762286)
chr8 (122-152)||(33365095-33365125)
chr8 (58-124)||(37686616-37686682)
chr8 (69-106)||(43995926-43995963)
chr8 (45-125)||(34279560-34279640)
chr8 (123-155)||(39921275-39921307)
[»] chr5 (23 HSPs)
chr5 (1-125)||(6702369-6702493)
chr5 (15-120)||(30491764-30491869)
chr5 (15-97)||(5504763-5504845)
chr5 (16-96)||(1975272-1975352)
chr5 (16-123)||(4845302-4845409)
chr5 (15-97)||(33144153-33144235)
chr5 (79-125)||(34017652-34017698)
chr5 (17-126)||(40008710-40008819)
chr5 (46-126)||(19401999-19402079)
chr5 (50-125)||(6158947-6159021)
chr5 (47-126)||(36580221-36580300)
chr5 (47-124)||(763295-763372)
chr5 (46-118)||(6706035-6706107)
chr5 (122-164)||(16049290-16049332)
chr5 (52-126)||(17644606-17644680)
chr5 (24-125)||(3458013-3458114)
chr5 (51-124)||(34016002-34016075)
chr5 (46-130)||(1974150-1974234)
chr5 (49-124)||(11135741-11135816)
chr5 (51-94)||(30489753-30489796)
chr5 (122-152)||(23927904-23927934)
chr5 (122-152)||(40484896-40484926)
chr5 (22-106)||(19399508-19399592)
[»] chr7 (18 HSPs)
chr7 (18-121)||(26604145-26604248)
chr7 (1-124)||(44552657-44552780)
chr7 (22-124)||(38790884-38790985)
chr7 (16-124)||(38792018-38792126)
chr7 (16-124)||(20379638-20379746)
chr7 (16-125)||(30359704-30359812)
chr7 (60-124)||(5060848-5060912)
chr7 (46-121)||(5172-5247)
chr7 (122-164)||(36107675-36107717)
chr7 (46-120)||(38386178-38386252)
chr7 (122-164)||(40210094-40210136)
chr7 (123-155)||(3407324-3407356)
chr7 (16-124)||(46302166-46302274)
chr7 (15-82)||(41799995-41800062)
chr7 (69-124)||(42548161-42548216)
chr7 (52-126)||(5729113-5729187)
chr7 (123-152)||(28363451-28363480)
chr7 (123-152)||(44959874-44959903)
[»] scaffold0041 (2 HSPs)
scaffold0041 (19-124)||(24338-24443)
scaffold0041 (77-126)||(23485-23534)
[»] chr3 (28 HSPs)
chr3 (15-124)||(19866733-19866842)
chr3 (33-126)||(6162669-6162762)
chr3 (15-124)||(15041975-15042084)
chr3 (15-97)||(34086809-34086891)
chr3 (15-124)||(7666931-7667040)
chr3 (16-126)||(53827631-53827741)
chr3 (16-124)||(42950958-42951066)
chr3 (1-96)||(39688707-39688802)
chr3 (1-124)||(44836433-44836556)
chr3 (24-97)||(42381642-42381715)
chr3 (51-124)||(44833470-44833543)
chr3 (41-125)||(47064863-47064947)
chr3 (46-124)||(4969875-4969953)
chr3 (52-126)||(11342888-11342962)
chr3 (32-124)||(11343783-11343876)
chr3 (51-131)||(15040674-15040754)
chr3 (33-126)||(42994882-42994975)
chr3 (15-126)||(3860808-3860918)
chr3 (45-124)||(35995137-35995216)
chr3 (32-124)||(50663875-50663967)
chr3 (52-124)||(53814567-53814639)
chr3 (77-123)||(13843624-13843670)
chr3 (46-124)||(42947375-42947453)
chr3 (123-164)||(52497451-52497492)
chr3 (77-133)||(39685203-39685259)
chr3 (46-124)||(2325561-2325639)
chr3 (122-152)||(39085343-39085373)
chr3 (122-164)||(48433154-48433196)
[»] chr4 (28 HSPs)
chr4 (1-124)||(36217870-36217993)
chr4 (16-125)||(33164475-33164584)
chr4 (15-124)||(36498906-36499015)
chr4 (15-125)||(24972389-24972499)
chr4 (15-126)||(12586182-12586294)
chr4 (15-97)||(55523752-55523834)
chr4 (15-124)||(40450931-40451040)
chr4 (15-94)||(40923406-40923485)
chr4 (15-124)||(636553-636662)
chr4 (46-127)||(40312794-40312875)
chr4 (46-127)||(40322870-40322951)
chr4 (16-124)||(53267771-53267879)
chr4 (45-124)||(36172165-36172244)
chr4 (51-125)||(34235709-34235783)
chr4 (46-116)||(36174579-36174649)
chr4 (46-127)||(45237408-45237489)
chr4 (33-126)||(51718172-51718265)
chr4 (16-124)||(28798115-28798223)
chr4 (22-97)||(42099502-42099577)
chr4 (122-164)||(890326-890368)
chr4 (122-164)||(27925242-27925284)
chr4 (51-125)||(55527918-55527992)
chr4 (77-126)||(628086-628135)
chr4 (46-124)||(12586798-12586875)
chr4 (46-124)||(45246981-45247059)
chr4 (46-108)||(53265808-53265870)
chr4 (122-151)||(42547615-42547644)
chr4 (46-126)||(23283212-23283292)
[»] chr2 (20 HSPs)
chr2 (24-125)||(18387240-18387341)
chr2 (16-125)||(37892978-37893087)
chr2 (15-125)||(11573632-11573742)
chr2 (16-136)||(12969234-12969353)
chr2 (1-124)||(939559-939682)
chr2 (60-124)||(20685006-20685070)
chr2 (20-96)||(24928686-24928762)
chr2 (20-124)||(25678272-25678376)
chr2 (46-124)||(22496076-22496154)
chr2 (16-88)||(42119193-42119265)
chr2 (45-124)||(8273245-8273324)
chr2 (46-121)||(11712961-11713036)
chr2 (46-124)||(12967270-12967349)
chr2 (65-125)||(20686821-20686881)
chr2 (52-107)||(8277394-8277449)
chr2 (122-164)||(17475124-17475166)
chr2 (16-94)||(22492476-22492554)
chr2 (18-124)||(30760154-30760260)
chr2 (122-152)||(34899782-34899812)
chr2 (77-125)||(24929364-24929412)
[»] scaffold1063 (1 HSPs)
scaffold1063 (45-125)||(1474-1554)
[»] scaffold1763 (1 HSPs)
scaffold1763 (16-124)||(336-442)
[»] scaffold0262 (1 HSPs)
scaffold0262 (50-124)||(8384-8458)
[»] scaffold0016 (1 HSPs)
scaffold0016 (51-131)||(69715-69795)
[»] scaffold0001 (1 HSPs)
scaffold0001 (122-164)||(397452-397494)
[»] scaffold0123 (1 HSPs)
scaffold0123 (127-163)||(27083-27119)


Alignment Details
Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 17436159 - 17436008
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  17436159 ttaagtcacgctacccttataactagcgcatgttaacttacgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaa 17436060  T
Q  101 ccatttgagtaatgagcagaattcattttttaaaaccatatccacccaatca 152  Q
    |||||||| ||||||||| ||||||||||||||||||||| |||||||||||    
T  17436059 ccatttgaataatgagcaaaattcattttttaaaaccatagccacccaatca 17436008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 125
Target Start/End: Original strand, 35060882 - 35060974
Alignment:
Q  33 ttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||| |||||||||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||||||||    
T  35060882 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaattca 35060974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 31522534 - 31522614
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||||||||||| |||||| ||||||||  | | |||||||||| |||||||||||||||||| |||||||||||||||||    
T  31522534 acgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaattca 31522614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 23608501 - 23608427
Alignment:
Q  50 agttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||||||| ||  |||||||||||||| ||||| ||||| ||||| ||||||| |||||||||||||||    
T  23608501 agttaacatgcgtagggatattttagacttttattttgggaatgaacggaatcatttgaataatgagcagaattc 23608427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 32275771 - 32275850
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||| |||||| ||| || |||||||| || | |||||||||| ||||||||||||||||||  ||||||||| ||||||    
T  32275771 cgcatgttaacttgcataggggcatttcagtcatttactttgggaatgagcggaaccatttggataatgagcataattca 32275850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 14153432 - 14153354
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| ||| ||||| | | |||||||||| |||||||  || |||||| ||||||||||||||||    
T  14153432 cgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaattc 14153354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 3101148 - 3101178
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  3101148 ttcattttttaaaaccatatccacccaatca 3101178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 8770540 - 8770570
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  8770540 ttcattttttaaaaccatatccacccaatca 8770570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 14431018 - 14430944
Alignment:
Q  50 agttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||||||| || ||||||| || |||||||| ||||||||| ||||| |||  ||||  ||||||||||    
T  14431018 agttaacatgcgtagggacattttaaacatttactttagaaatgagcagaaccgtttaggtaaatagcagaattc 14430944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 25400878 - 25400844
Alignment:
Q  79 tttactttggaaatgagcggaaccatttgagtaat 113  Q
    |||||||||||||||||||||||||||||| ||||    
T  25400878 tttactttggaaatgagcggaaccatttgaataat 25400844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 155
Target Start/End: Original strand, 11172755 - 11172788
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcc 155  Q
    |||||||||||||||||||||||| |||||||||    
T  11172755 ttcattttttaaaaccatatccactcaatcatcc 11172788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 31834052 - 31834023
Alignment:
Q  123 tcattttttaaaaccatatccacccaatca 152  Q
    ||||||||||||||||||||||||||||||    
T  31834052 tcattttttaaaaccatatccacccaatca 31834023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 28443045 - 28442920
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||  ||||||||||||| |||||||||||    
T  28443045 ttaagtcacgctacccttataactagcgcatgttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcggaa 28442946  T
Q  101 ccatttgagtaatgagcagaattcat 126  Q
    |||||||| |||||||||||| ||||    
T  28442945 ccatttgattaatgagcagaagtcat 28442920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 33403095 - 33403209
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||  ||  |||| ||||||    
T  33403095 ccttataactagcacatgttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatactgtttgggtaatg 33403194  T
Q  115 agcagaattcatttt 129  Q
    |||| ||||| ||||    
T  33403195 agcataattcttttt 33403209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 49033686 - 49033808
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||| | | |||| |||||||||||||||| | ||||||||||||||||  ||||||  |||||||  ||| |||||||||| |||||||||||    
T  49033686 ttaagtcacgtttctcttacaactagcgcatgttaattaacgctacgcaagttaaattgcgtagaggcatttg-gacatttactttgggaatgagcggaa 49033784  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
    |||||||| |||||||||||||||    
T  49033785 ccatttgaataatgagcagaattc 49033808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 3792633 - 3792559
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||||||||||    
T  3792633 gttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaattca 3792559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 35577493 - 35577575
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||| ||||||||| |||||||||||||| ||||||||    
T  35577493 ccttataactagcgcatgttaactcacgctacgcaagttaacatatgtaggggcattttcgacttttactttgggaatgagcg 35577575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 48025660 - 48025583
Alignment:
Q  20 taactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||||||||    
T  48025660 taactagtgcatgttaactcacgctacgcaagttaacatgcgtaagggcattttcaacttctactttgggaatgagcg 48025583  T

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Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Complemental strand, 11821260 - 11821158
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    ||||||||||||| ||||  |||| |||||||||||| || | ||||||| |||||||||||||| ||||| || |||||||||  ||||||||||||||    
T  11821260 tagcgcatgttaactcacaatacgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaatt 11821161  T
Q  124 cat 126  Q
    |||    
T  11821160 cat 11821158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 45691053 - 45691126
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||| ||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  45691053 gttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 45691196 - 45691268
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||| ||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 45691338 - 45691410
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||| ||| ||||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 2094366 - 2094441
Alignment:
Q  50 agttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||||| ||||||| ||  ||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||    
T  2094366 agttaatatgcgtagggatattttagacatttactttggaaatgagcagaacaatttgggtaatgagcagaattca 2094441  T

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Target: chr1; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 39650274 - 39650195
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||| ||||||||||||| ||||||||| ||| |||||||| | |||||||| ||||||||  |||||||||||||||||    
T  39650274 cgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaattca 39650195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 45688381 - 45688308
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||||||| |||||||||  ||||||||||||| ||||||| ||||||||||  |||||||| ||||||    
T  45688381 gttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttggataatgagcggaattc 45688308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 28446530 - 28446610
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| ||||||||||||| |||||||| || | |||||||||| |||||||| | ||||||| |||||||||| |||||||    
T  28446530 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaattcat 28446610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 50069204 - 50069312
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    ||||||||||| |||  |||| |||||||||| | ||||||||||| | ||||||||| ||| |||||||||| ||||||||   |  |||| |||||||    
T  50069204 cttataactagtgcaacttaactcacgctacgtatgttaacatgcgcaggggcattttggacatttactttgggaatgagcgatgctgtttgggtaatga 50069303  T
Q  116 gcagaattc 124  Q
    |||||||||    
T  50069304 gcagaattc 50069312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 124
Target Start/End: Original strand, 3792458 - 3792532
Alignment:
Q  51 gttaacatgcgtaaggg-cattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||| ||| ||| |||||| ||||||||| ||||||||||||| |||||||||  ||||||||| |||||    
T  3792458 gttaacatgtgtatgggacattttggacttttacgttggaaatgagcgaaaccatttggataatgagcataattc 3792532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 28475982 - 28476060
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||| ||| ||||||||    | |||||||||  |||||||||||||||||| ||||||||||||||||    
T  28475982 cgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaattc 28476060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 17696293 - 17696188
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||||||| |||||||||  |    ||||| ||||||||||  |||||||||||||||| || ||||  || ||||||||| |||| |||| ||    
T  17696293 ttaagtcacgctactcttataactgacatgagttaactcacgctacgtgagttaacatgcgtaagagcgttttgaacatttactttgaaaataagcgcaa 17696194  T
Q  101 ccattt 106  Q
    ||||||    
T  17696193 ccattt 17696188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 28474865 - 28474792
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||||||| |||||||| || | |||| ||||| |||||| | | ||||||| ||||||||||||||||    
T  28474865 gttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatgagcagaattc 28474792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 47488997 - 47489078
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||  |||| ||||| |||||| ||||||||| | ||| ||||||||||| |||| |||  |||||||||    
T  47488997 cttataactagcgcaacttaagtcacgttacgcatgttaacatgtgcaagagcattttagacatttattttaaaaatgagcg 47489078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 14795562 - 14795532
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  14795562 ttcattttttaaaaccatatccacccaatca 14795532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 14804436 - 14804406
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  14804436 ttcattttttaaaaccatatccacccaatca 14804406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 19585033 - 19585063
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  19585033 ttcattttttaaaaccatatccacccaatca 19585063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 31200551 - 31200581
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  31200551 ttcattttttaaaaccatatccacccaatca 31200581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 33401486 - 33401408
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| |||||||||| |||||||||||  | | |||||||||  |||||||| | |||||||| ||||||||| |||||    
T  33401486 cgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaatccatttgactaatgagcaaaattc 33401408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 50049935 - 50049905
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  50049935 ttcattttttaaaaccatatccacccaatca 50049905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 51251230 - 51251260
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  51251230 ttcattttttaaaaccatatccacccaatca 51251260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23558938 - 23559061
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||| ||||||||| |||| |||||||||||    
T  23558938 ttaagtcacgctacccttataactagggcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaa 23559037  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
    |||||||  |||||||||||||||    
T  23559038 ccatttggataatgagcagaattc 23559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 34276301 - 34276191
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||  ||||||||||||||||| ||||  |   |||| ||||||    
T  34276301 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcataggggcattttttacttttactttggaaataagcgatattgtttgggtaatg 34276202  T
Q  115 agcagaattca 125  Q
    |||||||||||    
T  34276201 agcagaattca 34276191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 123
Target Start/End: Complemental strand, 9384716 - 9384617
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    ||||||||||||| |||||||||||| |||||  |||||| || |||||| ||| |||| |||| |||||||||||||||||||| ||||||||||||||    
T  9384716 tagcgcatgttaactcacgctacgcatgttaagttgcgtagggacattttggacatttattttgaaaatgagcggaaccatttgaataatgagcagaatt 9384617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 43640951 - 43641053
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    |||||||  |||| ||||||||| |||||||||||||||| ||||| |||   | ||||||||||||||||||  ||||||||| |||||||||||||||    
T  43640951 tagcgcaacttaagtcacgctacacaagttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaatt 43641050  T
Q  124 cat 126  Q
    |||    
T  43641051 cat 43641053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 33220786 - 33220867
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    ||||| ||||||||||||| |||||||||  ||||||||||||| |||||| | ||||||||| ||||||||||||||||||    
T  33220786 acgcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaattcat 33220867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 33800468 - 33800549
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    ||||||||||| |||  |||| |||||||||||| ||||||||||| ||||||||||||||| |||||||| | ||||||||    
T  33800468 cttataactagtgcaacttaagtcacgctacgcatgttaacatgcgcaagggcattttagacatttactttaggaatgagcg 33800549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 125
Target Start/End: Complemental strand, 43635208 - 43635129
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||| ||||||||||||| ||||| | ||||| |||||||| ||||| | |||||||||||||||||| |||||||||||    
T  43635208 cgcatgttaacatgcgtacgggcaatatagacatttactttagaaataaacggaaccatttgagtaataagcagaattca 43635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 37687326 - 37687392
Alignment:
Q  60 cgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||  ||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  37687326 cgtaaggatattttggacatttactttggaaatgagcggaaccatttgggtaataagcagaattcat 37687392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 9418634 - 9418582
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaattcatttt 129  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  9418634 cttttactttgggaatgagcgaaaccatttgggtaatgagcagaattcatttt 9418582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 4640814 - 4640874
Alignment:
Q  65 gggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||||| |||||||||||||||||||||  ||  |||| |||||||||||||||||    
T  4640814 gggcattttagtcttttactttggaaatgagcgatacagtttgggtaatgagcagaattca 4640874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 5967237 - 5967315
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| ||||||||    | |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  5967237 cgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 5967315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 33220068 - 33220022
Alignment:
Q  79 tttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||    
T  33220068 tttactttggaa-tgagcggaaccatttggataatgagcagaattcat 33220022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 232110 - 232080
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  232110 ttcattttttaaaaccatatccacccaatca 232080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 708521 - 708491
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  708521 ttcattttttaaaaccatatccacccaatca 708491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 745733 - 745703
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  745733 ttcattttttaaaaccatatccacccaatca 745703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 869628 - 869598
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  869628 ttcattttttaaaaccatatccacccaatca 869598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 31762286 - 31762240
Alignment:
Q  79 tttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||||||||| |||||||| | |||||||| ||||||||||||||||    
T  31762286 tttactttgggaatgagcgaatccatttgaataatgagcagaattca 31762240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 33365125 - 33365095
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  33365125 ttcattttttaaaaccatatccacccaatca 33365095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 37686682 - 37686616
Alignment:
Q  58 tgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| |||| ||||||||||||||||||||| ||||| || ||| ||||| |||| ||| |||||||    
T  37686682 tgcgcaaggccattttagacttttactttgggaatgaacgaaacgatttgggtaaagaggagaattc 37686616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 106
Target Start/End: Complemental strand, 43995963 - 43995926
Alignment:
Q  69 attttagacttttactttggaaatgagcggaaccattt 106  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  43995963 attttcgacttttactttagaaatgagcggaaccattt 43995926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 34279560 - 34279640
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||| ||||||||| ||| ||||||||    | |||||||| | |||||||| | |||||| ||||||||||||||||||    
T  34279560 acgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaattca 34279640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 39921275 - 39921307
Alignment:
Q  123 tcattttttaaaaccatatccacccaatcatcc 155  Q
    |||||||||||||||||||| ||||||||||||    
T  39921275 tcattttttaaaaccatatcaacccaatcatcc 39921307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 6702493 - 6702369
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    ||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||  |||||||| ||    
T  6702493 ttaagtcacactacccttataactagtgcatgttaactcacgctacgcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaa 6702394  T
Q  101 ccatttgagtaatgagcagaattca 125  Q
    | ||||| | |||||||||||||||    
T  6702393 ctatttgggcaatgagcagaattca 6702369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 30491764 - 30491869
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| || |||||| |||||||||||||| |||||||| |  |||||| ||||||    
T  30491764 ccttataactagcgcatgttaactcacactacgcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcgaattcatttgggtaatg 30491863  T
Q  115 agcaga 120  Q
    ||||||    
T  30491864 agcaga 30491869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 5504845 - 5504763
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||| |||||||||||| | ||||||||    
T  5504845 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggcattttcgacttttactttaggaatgagcg 5504763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 1975272 - 1975352
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagc 96  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||| | ||||||||| ||| ||||||||||||||||||    
T  1975272 cttataactagcgcaacttaagtcacgctacgcatgttaacatgcgcatgggcattttggacatttactttggaaatgagc 1975352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 4845409 - 4845302
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| ||||||||| || ||||||||||| | | ||||||||||| |||||||| | ||||||||  || |||||| ||||||    
T  4845409 cttataactagcgcaatttaagtcacgctacacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcgatactatttgaataatga 4845310  T
Q  116 gcagaatt 123  Q
    ||||||||    
T  4845309 gcagaatt 4845302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 33144153 - 33144235
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||  | | |||||||| | ||||||||    
T  33144153 ccttataactagcgcatgttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatttactttaggaatgagcg 33144235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 34017652 - 34017698
Alignment:
Q  79 tttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||    
T  34017652 tttactttgaaaatgagcggaaccatttgagtaatgagcagaattca 34017698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 40008819 - 40008710
Alignment:
Q  17 ttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgag 116  Q
    ||||||| ||||||  |||| |||||||||||| ||||||||||| | ||||||||||||| |||||||||  ||||||||  |   |||  ||||||||    
T  40008819 ttataaccagcgcaacttaagtcacgctacgcatgttaacatgcgcaggggcattttagacatttactttgagaatgagcgataatgtttaggtaatgag 40008720  T
Q  117 cagaattcat 126  Q
    ||||||||||    
T  40008719 cagaattcat 40008710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 19401999 - 19402079
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| ||||||||||||| ||||||||| |||||||||||||  |||||| | ||||||||| |||||||| | |||||||    
T  19401999 cgcatgttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaatgagaataattcat 19402079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 6158947 - 6159021
Alignment:
Q  50 agttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||| |||| ||| ||||||||| |||||||||| |||||||| | |||||| ||||||||||||||||||    
T  6158947 agttaacatacgta-gggtattttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaattca 6159021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 47 - 126
Target Start/End: Complemental strand, 36580300 - 36580221
Alignment:
Q  47 gcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    ||||||||||||| ||| ||  |||||  ||||||| ||| ||||| ||||||||||||| |||||||||||||||||||    
T  36580300 gcaagttaacatgtgtagggatattttgaacttttattttagaaataagcggaaccatttaagtaatgagcagaattcat 36580221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 124
Target Start/End: Original strand, 763295 - 763372
Alignment:
Q  47 gcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||| ||||||  ||||||| ||   |||| ||||| ||||||||||||||||||||||||||||| |||||    
T  763295 gcaagttaacttgcgtataggcatttcagttatttattttgggaatgagcggaaccatttgagtaatgagcataattc 763372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 6706035 - 6706107
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagca 118  Q
    |||| ||||||||||||| |||||||| || | ||||||||||||||||||| | |||||||  |||||||||    
T  6706035 cgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagca 6706107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 16049290 - 16049332
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  16049290 ttcattttttaaaaccatatccacccaatcacccaatccaacc 16049332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 17644606 - 17644680
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||||||| ||| ||||| ||| |||||||||| |||||||| | ||||||  |||||||||| |||||||    
T  17644606 ttaacatgcgtaggggtattttggacatttactttgggaatgagcgaatccatttcggtaatgagcacaattcat 17644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 3458114 - 3458013
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    |||||||  |||| |||||||||||| ||||||||| | | ||| ||||| ||| ||||||||||||||||||   ||  |||  |||||||||||||||    
T  3458114 tagcgcaacttaagtcacgctacgcatgttaacatgtgcatgggtattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaatt 3458015  T
Q  124 ca 125  Q
    ||    
T  3458014 ca 3458013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 34016075 - 34016002
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||| ||| |||||||| || | |||||||||| |||||||| | ||||||  ||||||||||||||||    
T  34016075 gttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaattc 34016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 1974234 - 1974150
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcattttt 130  Q
    |||| ||||||||||| ||| ||||||| ||| |||||||||| ||||||||  || || || |||||||||| |||||| ||||    
T  1974234 cgcatgttaacatgcgcaagagcattttggacatttactttgggaatgagcgatactatctgggtaatgagcataattcaatttt 1974150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 11135816 - 11135741
Alignment:
Q  49 aagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||||||||||||| ||| ||||| | | |||| |||||||||||||| || |||||| |||| ||||| |||||    
T  11135816 aagttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataattc 11135741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Complemental strand, 30489796 - 30489753
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatga 94  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||    
T  30489796 gttaacatgcgtaggggcattttcgacttttactttgggaatga 30489753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Complemental strand, 23927934 - 23927904
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  23927934 ttcattttttaaaaccatatccacccaatca 23927904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 40484896 - 40484926
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  40484896 ttcattttttaaaaccatatccacccaatca 40484926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 19399592 - 19399508
Alignment:
Q  22 actagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccattt 106  Q
    |||||||||  |||| ||||||||| || ||||||||| ||| |  ||||||  ||||||||||| | |||||| ||||||||||    
T  19399592 actagcgcaacttaagtcacgctacacatgttaacatgtgtatgtacattttgaacttttactttaggaatgagtggaaccattt 19399508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 26604145 - 26604248
Alignment:
Q  18 tataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagc 117  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||| ||||||||||||  ||||||||||||||||||||||||||||    
T  26604145 tataactagcgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttgagtaatgagc 26604244  T
Q  118 agaa 121  Q
    ||||    
T  26604245 agaa 26604248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 44552657 - 44552780
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||| |  || ||||||||||||||||||| ||||| |||||||||||||||||||| | ||||||| |||||||||||||  ||||||||  |    
T  44552657 ttaagtcacgttcaccctataactagcgcatgttaactcacgttacgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgata 44552756  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
       |||| ||||||||||||||||    
T  44552757 ttgtttgggtaatgagcagaattc 44552780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 38790985 - 38790884
Alignment:
Q  22 actagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttgg-aaatgagcggaaccatttgagtaatgagcaga 120  Q
    ||||||||||||||| |||||||  ||| ||||||||||||| ||| ||||| |||||||||||||| ||||||||| |||||||||  |||||||||||    
T  38790985 actagcgcatgttaagtcacgct--gcatgttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcaga 38790888  T
Q  121 attc 124  Q
    ||||    
T  38790887 attc 38790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 38792018 - 38792126
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| |||||||||||| |||| || | ||| ||| |||||||||||||||||||  |||||| | |||||||||||||||||    
T  38792018 cttataactagcgcaacttaagtcacgctacgcatgttatcaagtgtaggggtattttagacttttactttgagaatgagtgaaaccatttgagtaatga 38792117  T
Q  116 gcagaattc 124  Q
    | |||||||    
T  38792118 gtagaattc 38792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 20379638 - 20379746
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    ||||||||||| |||  |||| |||||||| |||  ||||  |||||| ||||||||| |||||||||||||| |||||||||||||||||   ||||||    
T  20379638 cttataactagtgcaacttaagtcacgctatgcatattaagttgcgtaggggcattttggacttttactttgggaatgagcggaaccatttagataatga 20379737  T
Q  116 gcagaattc 124  Q
    ||| |||||    
T  20379738 gcataattc 20379746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 30359812 - 30359704
Alignment:
Q  16 cttataactagcgcatgttaaatc-acgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| | |||||||| ||||||||| || || || | |||| |||||||||||||| ||||||||||||   ||| |||| |    
T  30359812 cttataactagcgcatgttaaacccacgctacgtaagttaacaagcatagggacgttttggacttttactttgggaatgagcggaac--gttgggtaaag 30359715  T
Q  115 agcagaattca 125  Q
    |||||||||||    
T  30359714 agcagaattca 30359704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 5060912 - 5060848
Alignment:
Q  60 cgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||| |||||||  ||||||||||||| ||||||||||||||||||  ||||||| |||||||    
T  5060912 cgtaagagcattttcaacttttactttgggaatgagcggaaccatttggataatgagtagaattc 5060848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 5172 - 5247
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaa 121  Q
    |||| ||||||||||||| ||||||||  | | |||||||||| |||||||| | ||||||| |||||||||||||    
T  5172 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaa 5247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 36107675 - 36107717
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  36107675 ttcattttttaaaaccatatccactcaatcatccaatccaacc 36107717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 120
Target Start/End: Complemental strand, 38386252 - 38386178
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcaga 120  Q
    |||| ||||||||||||| |||||||| |  | ||||||||||||||||||| | |||||||  |||||||||||    
T  38386252 cgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcgaatccatttggataatgagcaga 38386178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 40210136 - 40210094
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  40210136 ttcattttttaaaaccatatccacccaatcatccaacccaacc 40210094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 3407356 - 3407324
Alignment:
Q  123 tcattttttaaaaccatatccacccaatcatcc 155  Q
    |||||||||||||||||||||||||||||||||    
T  3407356 tcattttttaaaaccatatccacccaatcatcc 3407324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 46302274 - 46302166
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||||||||||| |||| ||||||||||  ||| | ||||| ||| ||||||||   ||||||||   |   |||||||||||    
T  46302274 cttataactagcgcaacttaaatcacgctgcgcatgttaacatgcacaagagtattttggacatttacttttacaatgagcgatcctgcttgagtaatga 46302175  T
Q  116 gcagaattc 124  Q
    |||||||||    
T  46302174 gcagaattc 46302166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 41799995 - 41800062
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagactttta 82  Q
    |||||||||||||| ||||||| ||| |||||| ||| |||||| |||| || |||||| ||||||||    
T  41799995 ccttataactagcgtatgttaattcatgctacgtaagataacatacgtagggacattttcgactttta 41800062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 42548216 - 42548161
Alignment:
Q  69 attttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| |||||||||||||| |||||||  ||| ||||| ||||||||||||||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaattc 42548161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 5729113 - 5729187
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| |||||||||| ||||||| |  |||| ||| | ||||| || |||||||||||||| |||||||||||||    
T  5729113 ttaatatgcgtaaggacattttaaatatttattttaggaatgaacgaaaccatttgagtaaagagcagaattcat 5729187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 28363451 - 28363480
Alignment:
Q  123 tcattttttaaaaccatatccacccaatca 152  Q
    ||||||||||||||||||||||||||||||    
T  28363451 tcattttttaaaaccatatccacccaatca 28363480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 44959874 - 44959903
Alignment:
Q  123 tcattttttaaaaccatatccacccaatca 152  Q
    ||||||||||||||||||||||||||||||    
T  44959874 tcattttttaaaaccatatccacccaatca 44959903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 24338 - 24443
Alignment:
Q  19 ataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagca 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||  ||  |||||||||||||||    
T  24338 ataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttgagtaatgagca 24437  T
Q  119 gaattc 124  Q
    ||||||    
T  24438 gaattc 24443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 23534 - 23485
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||||||  |||||||  |||||||||| |||||||||||||||||    
T  23534 cttttactttgagaatgagcaaaaccatttgaataatgagcagaattcat 23485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 19866842 - 19866733
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||| ||||||    
T  19866842 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatactgtttgggtaatg 19866743  T
Q  115 agcagaattc 124  Q
    ||||||||||    
T  19866742 agcagaattc 19866733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 6162669 - 6162762
Alignment:
Q  33 ttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| |||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6162669 ttaagtcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattcat 6162762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 15041975 - 15042084
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||  |   |||| ||||||    
T  15041975 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatattgtttgggtaatg 15042074  T
Q  115 agcagaattc 124  Q
    ||||||||||    
T  15042075 agcagaattc 15042084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 34086809 - 34086891
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  34086809 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcg 34086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 7666931 - 7667040
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| ||||||||  ||  |||| ||||||    
T  7666931 ccttataactagcgcatgttaactcacgctatgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatg 7667030  T
Q  115 agcagaattc 124  Q
    |||| |||||    
T  7667031 agcaaaattc 7667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 53827631 - 53827741
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||||| ||||||||| ||| |||||||||| ||||||||  || ||||  |||||||    
T  53827631 cttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 53827730  T
Q  116 gcagaattcat 126  Q
    |||||||||||    
T  53827731 gcagaattcat 53827741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 42950958 - 42951066
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||||||||||||| || |||||||| |||| ||||| | | ||| |||||||||| |||||||||||  |||||||||||||    
T  42950958 cttataactagcgcaacttaaatcacgctacacatgttaacatacgtatgggcaatatggacatttactttgggaatgagcggaagtatttgagtaatga 42951057  T
Q  116 gcagaattc 124  Q
    |||||||||    
T  42951058 gcagaattc 42951066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39688707 - 39688802
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagc 96  Q
    |||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||| ||| ||| ||||| |||||||||||||  |||||||    
T  39688707 ttaagtcacgttacccttataactagcgcgtgttaactcacgctacgaaagttaacatgtgtaggggtattttcgacttttactttgagaatgagc 39688802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 44836433 - 44836556
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||| | | |||||||||||||||  |||| ||||||||| || ||||||||||||| ||||| | | ||| |||||||| |||||||||||||    
T  44836433 ttaagtcacgtttctcttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatttactttagaaatgagcggaa 44836532  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
    ||||||   |||||||||||||||    
T  44836533 ccatttagataatgagcagaattc 44836556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 42381715 - 42381642
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||    
T  42381715 tagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcg 42381642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 44833543 - 44833470
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| ||||||| ||||||||| |||||||||||||||||| | |||||||||||| ||||||||||||||||    
T  44833543 gttaatatgcgtaggggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaattc 44833470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 47064947 - 47064863
Alignment:
Q  41 cgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||||||| ||||||| ||| |||||| |||||||||| ||||||    
T  47064947 cgctacgtaagttaacatgcgtaggagcattttggacttttactttgggaatgagcagaatcatttgggtaatgagcataattca 47064863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 4969953 - 4969875
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||||   |||| ||| ||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  4969953 cgcaagttaactcacgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaattc 4969875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 11342962 - 11342888
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||||||| |||| |||| |||||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  11342962 ttaacatgcgtaggggctttttggacttttactttgggaatgaacggaaccatttgaacaatgagcagaattcat 11342888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 11343783 - 11343876
Alignment:
Q  32 gttaaatcacgctacgcaagttaacatgcgtaaggg-cattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| |||||||||   |||||||||||||| ||| |||||| |||||||||||||  | ||||||||||||||||| |||||||||||||||    
T  11343783 gttaagtcacgctacctgagttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatgagcagaattc 11343876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 15040754 - 15040674
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcatttttt 131  Q
    ||||||||||||| |||||||| || | |||||||||| |||||||| | ||||||| |||||||||||||||| ||||||    
T  15040754 gttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattcttttttt 15040674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 42994882 - 42994975
Alignment:
Q  33 ttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| |||||||| ||| ||||||||||  | ||||||||||||| |||||||||| ||||||||  || ||||  ||||||||||||||||||    
T  42994882 ttaagtcacgctatgcatgttaacatgcccatgggcattttagacatttactttgggaatgagcgatactatttaggtaatgagcagaattcat 42994975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 3860808 - 3860918
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    ||||||||||| || ||||||| ||||||||||||||||||||| ||| ||||| ||||  ||||||||||||  ||||||||  ||  ||| ||||||     
T  3860808 ccttataactaacgtatgttaactcacgctacgcaagttaacatacgt-agggcgttttcaacttttactttgagaatgagcgatactgtttaagtaatt 3860906  T
Q  115 agcagaattcat 126  Q
    |||| |||||||    
T  3860907 agcaaaattcat 3860918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 35995216 - 35995137
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| ||||||||||| | |||||||||| ||||||||||||  || |||| |||||||||| |||||||| |||||||    
T  35995216 acgcatgttaacatgcgaaggggcattttaaacttttactttgcgaaggagcagaaccatttgggtaatgagtagaattc 35995137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 50663967 - 50663875
Alignment:
Q  32 gttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| ||||||||||  |||||||||||||| ||||||||| |   |||||||||| |||||||| || |||||| || | |||||||||||    
T  50663967 gttaactcacgctacgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaatcatttgggtgaagagcagaattc 50663875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 53814567 - 53814639
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||||| |||||||||   | |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  53814567 ttaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 53814639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 13843624 - 13843670
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    |||||||||||| |||||||| ||||||||| |||||||||||||||    
T  13843624 cttttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 13843670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 42947453 - 42947375
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| | ||||||| |||||||||||||  |||||| | || |||||  ||||||||||||||||    
T  42947453 cgcatgttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaattc 42947375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 52497492 - 52497451
Alignment:
Q  123 tcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  52497492 tcattttttaaaacgatatccacccaatcatccaatccaacc 52497451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 39685259 - 39685203
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaattcattttttaa 133  Q
    ||||||||||| ||||||||| ||||||||| |||||||||| |||||  |||||||    
T  39685259 cttttactttgaaaatgagcgaaaccatttgggtaatgagcaaaattcggtttttaa 39685203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 2325561 - 2325639
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| || ||||||| ||||||||||||| ||||  || ||||||||   |||||| ||||||||    
T  2325561 cgcatgttaacatgcgtagggacattttaaacttttactttgggaatggacgaaaccatttagataatgaccagaattc 2325639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 39085343 - 39085373
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  39085343 ttcattttttaaaaccatatccacccaatca 39085373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 48433154 - 48433196
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||| ||||||||||||||||||| | ||||||    
T  48433154 ttcattttttaaaatcatatccacccaatcatccaacccaacc 48433196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 36217993 - 36217870
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||| | | ||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||| ||||||   ||    
T  36217993 ttaagtcacgtttctcttataactagtgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttactttgggaatgagtaaaa 36217894  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
    |||||||||||| |||||||||||    
T  36217893 ccatttgagtaaagagcagaattc 36217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 33164475 - 33164584
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||| ||  |||| |||||||||||| ||||||||||||| ||||||||| ||| |||||||||  |||||||||||||||||| |||||||    
T  33164475 cttataactagcacaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatga 33164574  T
Q  116 gcagaattca 125  Q
    ||||||||||    
T  33164575 gcagaattca 33164584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 36499015 - 36498906
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| || |||||||||  ||||||||||||| ||||||||  ||  |||||||||||    
T  36499015 ccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcattttcaacttttactttgggaatgagcgatactgtttgagtaatg 36498916  T
Q  115 agcagaattc 124  Q
    ||||||||||    
T  36498915 agcagaattc 36498906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 24972499 - 24972389
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||  |||| |||||||||||| | ||||||||  ||  |||  ||||||    
T  24972499 ccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggtgtttttgacttttactttaggaatgagcgatactgtttaggtaatg 24972400  T
Q  115 agcagaattca 125  Q
    |||||||||||    
T  24972399 agcagaattca 24972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 12586294 - 12586182
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggca-ttttagacttttactttggaaatgagcggaaccatttgagtaat 113  Q
    |||||||||||||||||||||| |||||||| |||||||||||||| || ||||| |||| |||||||||||||| ||||||||| |   |||  |||||    
T  12586294 ccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcatttttcgacttttactttgggaatgagcggtattgtttaggtaat 12586195  T
Q  114 gagcagaattcat 126  Q
    |||||||||||||    
T  12586194 gagcagaattcat 12586182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 55523834 - 55523752
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||||||||||||||| ||| | ||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  55523834 ccttataactagcgcatgttaactcaagatacacaagttaacatgcgtaggggcattttcgacttttactttgaaaatgagcg 55523752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 40451040 - 40450931
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||| |||| |||||||||| ||| ||||| |||||||||||||||| ||||||||| |||||||||||||| ||||||||  ||  |||  ||||||    
T  40451040 ccttattactaacgcatgttaactcaagctacacaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttaggtaatg 40450941  T
Q  115 agcagaattc 124  Q
    ||||||||||    
T  40450940 agcagaattc 40450931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 40923485 - 40923406
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatga 94  Q
    |||||||||||| ||||||||| |||| |||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  40923485 ccttataactagtgcatgttaactcactctacgcaagttaacatacgtaggggcattttttacttttactttggaaatga 40923406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 636553 - 636662
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    |||||||| |||||||| |||| |||||||||||||||||||||||| | |||||||||  | ||||||||||||||| ||||  ||  |||| ||||||    
T  636553 ccttataattagcgcattttaactcacgctacgcaagttaacatgcgcatgggcattttcaatttttactttggaaataagcgatactgtttgggtaatg 636652  T
Q  115 agcagaattc 124  Q
    |||| |||||    
T  636653 agcataattc 636662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 40312794 - 40312875
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcatt 127  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||    
T  40312794 cgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaaatcatt 40312875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 40322870 - 40322951
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcatt 127  Q
    |||| |||||||| |||||| | ||||||||||||||||||||||||||||| || |||||| ||||||||||||| |||||    
T  40322870 cgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagcagaaatcatt 40322951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 53267771 - 53267879
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| |||||||||| | ||||||||||||| || || | |  || ||||||||||||||||| |||||||||||  || ||     
T  53267771 cttataactagcgcaacttaagtcacgctacgtatgttaacatgcgtagggacaatatgaacatttactttggaaatgagtggaaccatttggatattgt 53267870  T
Q  116 gcagaattc 124  Q
    |||||||||    
T  53267871 gcagaattc 53267879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 36172244 - 36172165
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| |||||||| | || ||| ||||| |||||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  36172244 acgcatgttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatgagcagaattc 36172165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 34235709 - 34235783
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||||||| ||||||||  | | |||||||| | |||||||||||||||||| |||||||||| ||||||    
T  34235709 gttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggtaatgagcataattca 34235783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 36174579 - 36174649
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgag 116  Q
    |||| |||||||||||||  |||||||| || ||||||||||| |||||| | ||||||||||||||||||    
T  36174579 cgcatgttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttgagtaatgag 36174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 45237489 - 45237408
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcatt 127  Q
    |||| |||||||||| || |||||||| ||   |||||||| ||||| |||| | |||||||||||||||||||||||||||    
T  45237489 cgcatgttaacatgcataggggcatttcagttatttactttagaaataagcgaatccatttgagtaatgagcagaattcatt 45237408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 51718265 - 51718172
Alignment:
Q  33 ttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| ||||||||| || |||||  || ||| ||||||||| |||||||||||||| ||||||| ||||||| || ||||||| || |||||||    
T  51718265 ttaagtcacgctacacatgttaagttgtgtaggggcattttcgacttttactttgggaatgagcagaaccatctgggtaatgaacataattcat 51718172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 28798115 - 28798223
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| |||| |||| || ||||||||| | | ||||||||| ||| |||||||||  ||||||||  ||  |||| |||||||    
T  28798115 cttataactagcgcaacttaagtcacactacacatgttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatga 28798214  T
Q  116 gcagaattc 124  Q
    |||||||||    
T  28798215 gcagaattc 28798223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 42099502 - 42099577
Alignment:
Q  22 actagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcg 97  Q
    |||||||||  |||| |||||||||||| ||||||||||| | | | ||||| ||| |||||||||||||||||||    
T  42099502 actagcgcaacttaagtcacgctacgcatgttaacatgcgcaggtgtattttggacatttactttggaaatgagcg 42099577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 890368 - 890326
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||||||||||||||||||||||| | ||||||    
T  890368 ttcattttttaaaaccatatccacccaatcatccaacccaacc 890326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 27925284 - 27925242
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  27925284 ttcattttttaaaaccatatccacccaatcacccaatccaacc 27925242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 55527918 - 55527992
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||||||| ||||||||  | | ||| ||||||||||||||| | |||||| | ||||||||||||||||    
T  55527918 gttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaattca 55527992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 126
Target Start/End: Complemental strand, 628135 - 628086
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||||||||| | |||||||| ||||||||| ||||||||||||||||||    
T  628135 cttttactttaggaatgagcgaaaccatttgggtaatgagcagaattcat 628086  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 12586798 - 12586875
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| || |||||  | | |||| |||||||||||||| | ||||||||||||||||| ||||||    
T  12586798 cgcatgttaacatgcgtagggacatttcggtcattta-tttggaaatgagcgaatccatttgagtaatgagctgaattc 12586875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 45246981 - 45247059
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| |||||||| |||| || ||||||   | |||||||| ||||||| ||||||||||||| ||||||||| |||||    
T  45246981 cgcatgttaacatacgtagggacattttgatcatttactttagaaatgaacggaaccatttgaataatgagcataattc 45247059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 108
Target Start/End: Complemental strand, 53265870 - 53265808
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttga 108  Q
    |||| ||||||||||||| | ||||||| || ||||||||| | |||||||| ||||||||||    
T  53265870 cgcatgttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttga 53265808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 151
Target Start/End: Original strand, 42547615 - 42547644
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatc 151  Q
    ||||||||||||||||||||||||||||||    
T  42547615 ttcattttttaaaaccatatccacccaatc 42547644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 23283292 - 23283212
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattcat 126  Q
    |||| |||||| ||| || ||||||||  | | |||||||||||||| |||| ||| |||||| |||| ||||||||||||    
T  23283292 cgcatgttaacttgcataggggcatttcggtcatttactttggaaataagcgaaactatttgaataatcagcagaattcat 23283212  T

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Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 18387341 - 18387240
Alignment:
Q  24 tagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaatt 123  Q
    |||||||  |||| |||||||||||| ||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||||||||||||||||||||||    
T  18387341 tagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcatttttgatatttactttgggaatgagcagaaccatttgagtaatgagcagaatt 18387242  T
Q  124 ca 125  Q
    ||    
T  18387241 ca 18387240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 37892978 - 37893087
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||| ||| |||||||||| |||||||||| |||||||||||| || ||||||||| |||||||||||||| |||||||| ||||||||| ||||| |    
T  37892978 cttatacctaacgcatgttaactcacgctacgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaatta 37893077  T
Q  116 gcagaattca 125  Q
    ||||||||||    
T  37893078 gcagaattca 37893087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 11573742 - 11573632
Alignment:
Q  15 ccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatg 114  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||||||||  |   |||| ||||||    
T  11573742 ccttataactagcacatgttaactcacgctacgcaagttaacatacgtaggggcatttttgacttttactttgggaatgagcgatattgtttgggtaatg 11573643  T
Q  115 agcagaattca 125  Q
    |||||||||||    
T  11573642 agcagaattca 11573632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 12969234 - 12969353
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||||| |||||||||  ||||||||||||| |||||||||||||||||   ||||||    
T  12969234 cttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttgaacttttactttgg-aatgagcggaaccatttagataatga 12969332  T
Q  116 gcagaattcattttttaaaac 136  Q
    ||||||||  || ||||||||    
T  12969333 gcagaatttgttatttaaaac 12969353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 939682 - 939559
Alignment:
Q  1 ttaagtcacgctacccttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaa 100  Q
    |||||||||| | | |||| |||||||||||||||| ||||||||| ||||||||  ||| |  ||||||||| ||| ||||| |||| |||||||||||    
T  939682 ttaagtcacgtttctcttacaactagcgcatgttaactcacgctacacaagttaagttgcattggggcattttggacatttacattgggaatgagcggaa 939583  T
Q  101 ccatttgagtaatgagcagaattc 124  Q
     ||||||| |||||||||||||||    
T  939582 tcatttgaataatgagcagaattc 939559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 20685070 - 20685006
Alignment:
Q  60 cgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||| |||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  20685070 cgtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatgagcagaattc 20685006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 24928762 - 24928686
Alignment:
Q  20 taactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagc 96  Q
    ||||||||||||||||| ||||||||||||||||||||||  || | ||||||| |||||||||||||| |||||||    
T  24928762 taactagcgcatgttaactcacgctacgcaagttaacatgtttaggagcattttcgacttttactttgggaatgagc 24928686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 25678376 - 25678272
Alignment:
Q  20 taactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcag 119  Q
    ||||||||||||||||| ||| ||||||||||||||||||  || | ||||||| ||||||||||||| |||||||||  ||  ||||  ||||||||||    
T  25678376 taactagcgcatgttaactcatgctacgcaagttaacatgtttaggagcatttttgacttttactttgaaaatgagcgatactgtttggataatgagcag 25678277  T
Q  120 aattc 124  Q
    |||||    
T  25678276 aattc 25678272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 22496076 - 22496154
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||||||||||||||||| ||||||||| |||||||||  || ||||  |||||||||| |||||    
T  22496076 cgcatgttaacatgcgtaagggcattttagacatttactttgaaaatgagcgatactatttaggtaatgagcataattc 22496154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 42119265 - 42119193
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttgg 88  Q
    |||||||||||||||  |||| ||||||||| || ||||||||||||| ||||||||| ||| ||||||||||    
T  42119265 cttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcattttggacatttactttgg 42119193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 124
Target Start/End: Complemental strand, 8273324 - 8273245
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    ||||| ||||||||||||| ||||||||  | | |||||||||| |||||||| | ||||||| ||||||||||||||||    
T  8273324 acgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaattc 8273245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 121
Target Start/End: Complemental strand, 11713036 - 11712961
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaa 121  Q
    |||| |||||||| |||| ||||||||| |||||||||||||| |||||||| |||||| |  |||||||||||||    
T  11713036 cgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaaaccatctaggtaatgagcagaa 11712961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 12967349 - 12967270
Alignment:
Q  46 cgcaagttaacatgcgtaagggcattttagactttt-actttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||| ||||||||||||| ||| ||||| ||||||| ||||||  |||||||||||||||||  ||||||||||||||||    
T  12967349 cgcatgttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaattc 12967270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 20686821 - 20686881
Alignment:
Q  65 gggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||||||| |||||||||||| | ||||||||||| ||||||| ||| ||||||||||||    
T  20686821 gggcattttggacttttactttaggaatgagcggaaacatttgaataacgagcagaattca 20686881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 8277394 - 8277449
Alignment:
Q  52 ttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttg 107  Q
    ||||| |||||||||||||||  | | |||||||||| ||||||||||||||||||    
T  8277394 ttaacttgcgtaagggcatttcggtcatttactttgggaatgagcggaaccatttg 8277449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 17475124 - 17475166
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    |||||||||||||||||||| |||||||||| || ||||||||    
T  17475124 ttcattttttaaaaccatattcacccaatcacccaatccaacc 17475166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 22492554 - 22492476
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatga 94  Q
    |||||||||||||||  |||| ||||||||| || ||||| ||||| | |||||||||  || |||||||||| |||||    
T  22492554 cttataactagcgcaacttaagtcacgctacacatgttaatatgcgcaggggcattttgaacatttactttgggaatga 22492476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 30760260 - 30760154
Alignment:
Q  18 tataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagc 117  Q
    |||||||||||||  |||| | ||||||| ||  |||||||||| | || |||||||||| |||||||| |||||||| |  |   ||||| ||||||||    
T  30760260 tataactagcgcaacttaagttacgctacacatattaacatgcgcagggacattttagacatttactttagaaatgagtgatattgtttgaataatgagc 30760161  T
Q  118 agaattc 124  Q
    |||||||    
T  30760160 agaattc 30760154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 152
Target Start/End: Original strand, 34899782 - 34899812
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatca 152  Q
    |||||||||||||||||||||||||||||||    
T  34899782 ttcattttttaaaaccatatccacccaatca 34899812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 24929364 - 24929412
Alignment:
Q  77 cttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    |||||||||||| ||| |||| ||||||||  |||||||||||||||||    
T  24929364 cttttactttgggaatcagcgaaaccattttggtaatgagcagaattca 24929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 125
Target Start/End: Complemental strand, 1554 - 1474
Alignment:
Q  45 acgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattca 125  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||  ||||||||||||||||||| |||||||||||||||||    
T  1554 acgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcggaaccatttgggtaatgagcagaattca 1474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 336 - 442
Alignment:
Q  16 cttataactagcgcatgttaaatcacgctacgcaagttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatga 115  Q
    ||||||||||| ||||||||| ||||  |||| |||||||||||| |||||||||||  || ||||||||||| |||||||| ||||||||| |||| ||    
T  336 cttataactagtgcatgttaactcac--tacgtaagttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgggtaaaga 433  T
Q  116 gcagaattc 124  Q
    ||| |||||    
T  434 gcataattc 442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 8458 - 8384
Alignment:
Q  50 agttaacatgcgtaagggcattttagacttttactttggaaatgagcggaaccatttgagtaatgagcagaattc 124  Q
    |||||||||||||||||| |||||| || |||||||| ||||||||| ||| | |||| |||| |||||||||||    
T  8458 agttaacatgcgtaagggtattttacacatttactttagaaatgagcagaaacgtttgggtaaagagcagaattc 8384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 131
Target Start/End: Complemental strand, 69795 - 69715
Alignment:
Q  51 gttaacatgcgtaagggcattttagacttttactttggaaatgagcggaacc-atttgagtaatgagcagaattcatttttt 131  Q
    ||||||||| |||||| |||||| |||||||||||||| |||||||| |||| |||||||||| ||||| ||||| ||||||    
T  69795 gttaacatgtgtaagg-cattttggacttttactttggtaatgagcgaaaccaatttgagtaaagagcaaaattcttttttt 69715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 397452 - 397494
Alignment:
Q  122 ttcattttttaaaaccatatccacccaatcatcctatccaacc 164  Q
    ||||||||||||||||||||||||||||||| || ||||||||    
T  397452 ttcattttttaaaaccatatccacccaatcacccaatccaacc 397494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 27083 - 27119
Alignment:
Q  127 tttttaaaaccatatccacccaatcatcctatccaac 163  Q
    |||||||||||||||||||||||||| || |||||||    
T  27083 tttttaaaaccatatccacccaatcacccaatccaac 27119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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