View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8385_low_30 (Length: 227)

Name: NF8385_low_30
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8385_low_30
NF8385_low_30
[»] chr1 (2 HSPs)
chr1 (1-226)||(28446088-28446315)
chr1 (60-226)||(49030587-49030740)
[»] chr6 (3 HSPs)
chr6 (75-226)||(17436174-17436325)
chr6 (63-226)||(25403577-25403727)
chr6 (102-208)||(34131554-34131664)
[»] chr5 (1 HSPs)
chr5 (1-190)||(6705642-6705832)
[»] chr4 (3 HSPs)
chr4 (31-226)||(51719344-51719540)
chr4 (61-226)||(628451-628603)
chr4 (144-212)||(38653613-38653681)
[»] chr3 (5 HSPs)
chr3 (1-156)||(53814189-53814345)
chr3 (61-226)||(13840294-13840446)
chr3 (61-226)||(39685543-39685695)
chr3 (83-208)||(21566609-21566734)
chr3 (65-109)||(3860615-3860659)
[»] chr8 (1 HSPs)
chr8 (60-212)||(9387463-9387602)
[»] scaffold0246 (1 HSPs)
scaffold0246 (61-226)||(2397-2549)
[»] scaffold0041 (1 HSPs)
scaffold0041 (63-226)||(23829-23979)
[»] chr7 (2 HSPs)
chr7 (61-212)||(41798905-41799043)
chr7 (61-211)||(44552417-44552554)
[»] chr2 (3 HSPs)
chr2 (63-226)||(942814-942964)
chr2 (61-101)||(24928982-24929022)
chr2 (61-101)||(25678596-25678636)
[»] scaffold0262 (1 HSPs)
scaffold0262 (108-226)||(8597-8714)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 28446315 - 28446088
Alignment:
Q  1 atgcgcagcagacttgcatggcagtggtagtggcagtagctgctggcttgttacatttgtcc-tgtttagtgaacatgcaattattcaataataattttg 99  Q
    ||||||| ||||||||||||||| ||| ||||||| ||||||||| |||||| ||| ||||| ||||||||||| ||||||| ||||||||||||| |||    
T  28446315 atgcgcatcagacttgcatggcaatggcagtggcaatagctgctgccttgttccatctgtccctgtttagtgaatatgcaatcattcaataataatattg 28446216  T
Q  100 gtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataataatttagaaaaacaattttaacga-aaaataacgtaa 198  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||    
T  28446215 gtacaaccattgattgattcatccagaactcataatttagagatcatgcagtcattcaataataatttagaaacacaattttaacgaaaaaataacgtaa 28446116  T
Q  199 atgtcataaataaggtcaaccgcgcaaa 226  Q
    ||||||||||||||| |||||| |||||    
T  28446115 atgtcataaataaggccaaccgtgcaaa 28446088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 60 - 226
Target Start/End: Original strand, 49030587 - 49030740
Alignment:
Q  60 tcctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgat 159  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||             ||    
T  49030587 tcctatttagtgaacatgcaattattcaataataattttggtacagccattcattgattcaaccagaactcataatttagagaac-----------gaat 49030675  T
Q  160 aataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    |||  |||||||| |||||||||||||||||||| ||||||||||||||||||  |||||| |||||    
T  49030676 aat--tttagaaacacaattttaacgaaaaataaggtaaatgtcataaataagcccaaccgtgcaaa 49030740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 17436325 - 17436174
Alignment:
Q  75 atgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataataatttagaaaaa 174  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  17436325 atgcaattattcaataataattttggtacaaccattcatttattcatctagaactcataatttagagaacatgcagtcattcaataataatttagaaaca 17436226  T
Q  175 caattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  17436225 caattttaacgtaaaataatgtaaatgtcataaataaggccaaccgcgcaaa 17436174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 25403727 - 25403577
Alignment:
Q  63 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataat 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||             |||||    
T  25403727 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaactagaactcataatttagagaac-----------gaataat 25403639  T
Q  163 aatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
      |||||||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  25403638 --tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaa 25403577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 34131664 - 34131554
Alignment:
Q  102 acaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataat----aatttagaaaaacaattttaacgaaaaataacgta 197  Q
    |||||||||||||  |||| | | ||||||||||||| |||||||||| ||||||  | ||    |||||||||| |||||||||||||||| ||||  |    
T  34131664 acaaccattcattctttcaaccaaaactcataatttaaagaacatgcattcattcattcattcataatttagaaacacaattttaacgaaaattaactca 34131565  T
Q  198 aatgtcataaa 208  Q
    |||||||||||    
T  34131564 aatgtcataaa 34131554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 6705832 - 6705642
Alignment:
Q  1 atgcgcagcagacttgcatggcagtggtagtggcagtagctgctggcttgttacatttgtcc-tgtttagtgaacatgcaattattcaataataattttg 99  Q
    ||||||| |||| | |||||||||||| ||||||||||||||||| |||||| ||| ||||| ||||||||||| ||||||| |||||||||||||||||    
T  6705832 atgcgcaacagaatagcatggcagtggcagtggcagtagctgctgccttgttccatctgtccctgtttagtgaatatgcaatcattcaataataattttg 6705733  T
Q  100 gtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataataatttagaaaaacaattttaacgaaaaa 190  Q
    ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||    
T  6705732 gtacaaccattcattgattcatccataactcataatttagagatcatgcagtcattcaataataatttagaaacacaattttaacgaaaaa 6705642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 51719540 - 51719344
Alignment:
Q  31 tggcagtagctgctggcttgttacatttgtcc-tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaact 129  Q
    ||||||||||| ||| |||||| ||| | ||| | ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||  |||||    
T  51719540 tggcagtagcttctgccttgttccatctatccctctttagtgaatatgcaatcattcaataataattttggtacaaccattcattggttcatcctgaact 51719441  T
Q  130 cataatttagagaacatgcagtcattcgataataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  51719440 cataatttagagaacatgcagtcattcaataataattcaaaaacacaattttaacgaaaaataacgtaaatgtcataaataaggccaaccgcgcaaa 51719344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 628451 - 628603
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||             |||    
T  628451 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaactcataatttagagaac-----------gaata 628539  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||  |||||||| |||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  628540 at--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaa 628603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 38653681 - 38653613
Alignment:
Q  144 catgcagtcattcgataataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataag 212  Q
    |||||| ||||||  | |||||||||| | ||||| |||||||||| ||||  ||||||||||||||||    
T  38653681 catgcattcattcattcataatttagatacacaatattaacgaaaattaactaaaatgtcataaataag 38653613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 8e-48; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 53814345 - 53814189
Alignment:
Q  1 atgcgcagcagacttgcatggcagtggtagtggcagtagctgctggcttgttacatttgtcc-tgtttagtgaacatgcaattattcaataataattttg 99  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| |||||| ||| ||||| ||||||||||| ||||||  |||||||||||||||||    
T  53814345 atgcgcatcagatttgcatggcagtggtagtggcagtagctactgccttgtttcatctgtccctgtttagtgaatatgcaaccattcaataataattttg 53814246  T
Q  100 gtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattc 156  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||    
T  53814245 gtacaaccattcattgattaatccagaactcataatttagagatcatgcagccattc 53814189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 13840446 - 13840294
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| | |||||||||||||||||||||             |||    
T  13840446 cctgtttagtgaacatgcaattattcgataataattttgatacaatcattcattgattcaaccagaactcataatttagagaac-----------gaata 13840358  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||  |||||||| |||||||||| ||||||||||||||||||||||||||||  |||||| |||||    
T  13840357 at--tttagaaacacaattttaatgaaaaataacgtaaatgtcataaataagtccaaccgtgcaaa 13840294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 39685543 - 39685695
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||             |||    
T  39685543 cctgtttagtgaacatgcaattattcgataataatttttgtacaaccattcattgattcaaccagaactcataatttagagaac-----------gaata 39685631  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||  |||||| | ||||||||||||||||||||| |||||||||||||||||  |||||| |||||    
T  39685632 at--tttagacacacaattttaacgaaaaataacataaatgtcataaataagcccaaccgtgcaaa 39685695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 83 - 208
Target Start/End: Complemental strand, 21566734 - 21566609
Alignment:
Q  83 attcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataataatttagaaaaacaatttta 182  Q
    ||||||||||||||  |||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| ||||||||||| |||  | ||||||    
T  21566734 attcaataataattcaggtacaaccattcattgattcaaccaaaactcataatttagagaacatgcattcattcaataataatttaaaaacgcgatttta 21566635  T
Q  183 acgaaaaataacgtaaatgtcataaa 208  Q
    || |||| ||||  ||||||||||||    
T  21566634 actaaaattaactcaaatgtcataaa 21566609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 3860615 - 3860659
Alignment:
Q  65 tttagtgaacatgcaattattcaataataattttggtacaaccat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  3860615 tttagtgaacatgcaattattcaataataattttggtacaaccat 3860659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 60 - 212
Target Start/End: Complemental strand, 9387602 - 9387463
Alignment:
Q  60 tcctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgat 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||             ||    
T  9387602 tcctgtttagtgaacatgcaattattcaataataattttggtacaaccattaattgattcaaccagaactcataatttagagaac-----------gaat 9387514  T
Q  160 aataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataag 212  Q
    |||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  9387513 aat--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataag 9387463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 61 - 226
Target Start/End: Complemental strand, 2549 - 2397
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||             |||    
T  2549 cctgtttagtaaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaactcataatttagagaac-----------gaata 2461  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
    ||  |||||||| |||||||||||||||||||| ||||||||||||||||||  |||||| |||||    
T  2460 at--tttagaaacacaattttaacgaaaaataatgtaaatgtcataaataagcccaaccgtgcaaa 2397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 23829 - 23979
Alignment:
Q  63 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataat 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||             |||||    
T  23829 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagagaac-----------gaataat 23917  T
Q  163 aatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
      |||||||| ||||||||||||||||||||||||||| |||||||||||  |||||| |||||    
T  23918 --tttagaaacacaattttaacgaaaaataacgtaaatatcataaataagcccaaccgtgcaaa 23979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 41798905 - 41799043
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||  ||||||||||||||             |||    
T  41798905 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaacagaacgaataatttagagaac-----------gaata 41798993  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataag 212  Q
    ||  |||||||| |||||||||||||||||||||||||||||||||||||||    
T  41798994 at--tttagaaacacaattttaacgaaaaataacgtaaatgtcataaataag 41799043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 211
Target Start/End: Original strand, 44552417 - 44552554
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgata 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  ||||||||||||||             |||    
T  44552417 cctgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcaaccagaacgaataatttagagaac-----------gaata 44552505  T
Q  161 ataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataa 211  Q
    ||  |||||||| |||||||||||||||||||| |||||||||||||||||    
T  44552506 at--tttagaaacacaattttaacgaaaaataatgtaaatgtcataaataa 44552554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 226
Target Start/End: Complemental strand, 942964 - 942814
Alignment:
Q  63 tgtttagtgaacatgcaattattcaataataattttggtacaaccattcattgattcatctagaactcataatttagagaacatgcagtcattcgataat 162  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||  ||||||||||||||             |||||    
T  942964 tgtttagtgaacatgcaattattcaataataattttggtaaaatcattcattgattcaaccagaacgaataatttagagaac-----------gaataat 942876  T
Q  163 aatttagaaaaacaattttaacgaaaaataacgtaaatgtcataaataaggtcaaccgcgcaaa 226  Q
      |||||||| ||| |||||| ||||||||||||||||||||||||||||  |||||| |||||    
T  942875 --tttagaaacacatttttaatgaaaaataacgtaaatgtcataaataagcccaaccgtgcaaa 942814  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 24929022 - 24928982
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggt 101  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24929022 cctgtttagtgaacatgcaattattcaataataattttggt 24928982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 25678636 - 25678596
Alignment:
Q  61 cctgtttagtgaacatgcaattattcaataataattttggt 101  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25678636 cctgtttagtgaacatgcaattattcaataataattttggt 25678596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 8597 - 8714
Alignment:
Q  108 attcattgattcatctagaactcataatttagagaacatgcagtcattcgataataatttagaaaaacaattttaacgaaaaataacgtaaatgtcataa 207  Q
    ||||||| ||||| | | |||||||||||||||  ||||||| ||||||  | |||||||||||| ||||| ||| || |||||||||||||||||||||    
T  8597 attcattcattcaaccaaaactcataatttagaacacatgcattcattcattcataatttagaaacacaatattaccg-aaaataacgtaaatgtcataa 8695  T
Q  208 ataaggtcaaccgcgcaaa 226  Q
    |||||  ||||||| ||||    
T  8696 ataagtgcaaccgcacaaa 8714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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