View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8385_low_5 (Length: 614)
Name: NF8385_low_5
Description: NF8385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8385_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 462; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 10 - 596
Target Start/End: Complemental strand, 27215707 - 27215100
Alignment:
| Q |
10 |
agaagcagagaacaacttcatcaa-tcaccttcaaacagcaaaatacaatcgaaaaactctcaccaat----atatattcacaagccggcaaaac----- |
99 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||| ||| |||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| |
|
|
| T |
27215707 |
agaagcagagagcaacttcatcaaatcaccttcacacaacaaactacaatcgaaaaactctcactaattaatatatattcacaagcctgcaaaacaagat |
27215608 |
T |
|
| Q |
100 |
-----------catatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataacta |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215607 |
taatcaaaagccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataacta |
27215508 |
T |
|
| Q |
189 |
cattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggagg |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27215507 |
cattaattttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttactaaattcatttgtatttgtatatgcagtggttggagg |
27215408 |
T |
|
| Q |
289 |
agctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttg |
388 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215407 |
agctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttg |
27215308 |
T |
|
| Q |
389 |
ggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtg |
488 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27215307 |
ggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtg |
27215208 |
T |
|
| Q |
489 |
ccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggaca |
588 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27215207 |
ccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggaca |
27215108 |
T |
|
| Q |
589 |
agatttct |
596 |
Q |
| |
|
|||||||| |
|
|
| T |
27215107 |
agatttct |
27215100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 99 - 596
Target Start/End: Complemental strand, 27221559 - 27221062
Alignment:
| Q |
99 |
ccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaatttt |
198 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221559 |
ccatatccaaaatgacaagcacccgcgttgctctatgccttagttttgcattcctcttctatggtacgtacatatatcaatacataactacattaatttt |
27221460 |
T |
|
| Q |
199 |
ccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcattcgtatttgtatatgcagtggttggaggagctaaggtg |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221459 |
ccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttattaaattcatttgtatttgtatatgcagtggttggaggagctaaggtg |
27221360 |
T |
|
| Q |
299 |
acattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggag |
398 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27221359 |
actttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctcagctatcaacgacaggtttcgagttgggatctggag |
27221260 |
T |
|
| Q |
399 |
ttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagctgtgccaccgccga |
498 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27221259 |
ttactatttcagtggaccttccatcaccatggtcgggtagattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccga |
27221160 |
T |
|
| Q |
499 |
ttgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggggacaagatttct |
596 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||| |
|
|
| T |
27221159 |
ttgtgcctctggtcaagtcggttgcaacggtgctggggcaatcccaccagcaacattggtagaaataacggtagcaacagacgggggacaagacttct |
27221062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 263 - 596
Target Start/End: Original strand, 27443468 - 27443801
Alignment:
| Q |
263 |
gtatttgtatatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctc |
362 |
Q |
| |
|
|||||| | |||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
27443468 |
gtatttctttatgcagttgttggaggagctaaggtgacgttcacaaataggtgtgaatacactgtatggccaggaacgttaaccggagaccaaaaacctc |
27443567 |
T |
|
| Q |
363 |
agctatcaacgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgctt |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443568 |
agctatcaacgacaggtttcgagttgggatctggagttactatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgctt |
27443667 |
T |
|
| Q |
463 |
caacaacaatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaa |
562 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
27443668 |
caacaacaatggaaagttcagctgtgccaccgccgattgtgcctctggtcaactcggttgcaatggtgctggcgcaatcccaccagcaacattggtagaa |
27443767 |
T |
|
| Q |
563 |
ataaccgtagcaacaaacgggggacaagatttct |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
27443768 |
ataaccgtagcaacaaacgggggacaagatttct |
27443801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 272 - 596
Target Start/End: Complemental strand, 27433133 - 27432809
Alignment:
| Q |
272 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
371 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
27433133 |
tatgcagcggttggaggagctaaggtgacattcacaaataggtgtgaatacactgtatggccgggaacgttaactggagaccaaaagcctcagctatcaa |
27433034 |
T |
|
| Q |
372 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
471 |
Q |
| |
|
| || ||||| ||||| ||| |||||| || ||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
27433033 |
caacgggttttgagttaggacctggagcaacaattgaggtggaccttccatcaccatggtcgggtcgattttggggacgaaccggatgctccaacaacaa |
27432934 |
T |
|
| Q |
472 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
571 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27432933 |
tggaaagttcagttgtgccaccgccgattgtgcctctggtcaagtcggttgtaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
27432834 |
T |
|
| Q |
572 |
gcaacaaacgggggacaagatttct |
596 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
27432833 |
gcaacaaacgggggacaagatttct |
27432809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 272 - 596
Target Start/End: Complemental strand, 27208053 - 27207729
Alignment:
| Q |
272 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
27208053 |
tatgcagtggttggaggagctaaggtgacattcacaaataggtgtgcatacactgtatggccaggaacgttaactggagaccaaaaacctcagctatcga |
27207954 |
T |
|
| Q |
372 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
471 |
Q |
| |
|
| || ||||| ||||| ||| |||||| || ||| | ||||||||||||||||||||||| || |||||||||||||||| ||||||| | ||||||| |
|
|
| T |
27207953 |
caacgggttttgagttaggacctggagcaacaattgcggtggaccttccatcaccatggtcgggaagattttggggccgaactggatgctccgacaacaa |
27207854 |
T |
|
| Q |
472 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
571 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |
|
|
| T |
27207853 |
cggaaggttcagctgcgccaccgccgattgtgcctccggtcaagtcggttgcaacggtgctggcgcaatcccaccagcaacactggtagaaataacaata |
27207754 |
T |
|
| Q |
572 |
gcaacaaacgggggacaagatttct |
596 |
Q |
| |
|
||| | ||||||||||||||||||| |
|
|
| T |
27207753 |
gcatccaacgggggacaagatttct |
27207729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 285 - 596
Target Start/End: Complemental strand, 27389334 - 27389023
Alignment:
| Q |
285 |
gaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgacaggtttcga |
384 |
Q |
| |
|
||||||| | ||| |||||||| ||||| |||| |||||| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27389334 |
gaggagccacggtaacattcacgaatagatgtggatacaccgtatggccaggaaccttaaccggagaccaaaaacctcagctatcaacaacaggtttcga |
27389235 |
T |
|
| Q |
385 |
gttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagtttagc |
484 |
Q |
| |
|
||| ||| |||||| || | |||| ||| |||| || |||||||| ||||||||||||| |||||||||||||| | |||||| ||| |||||| |
|
|
| T |
27389234 |
gttaggacctggagcaacgaactcagcggaaattccttccccatggtcaggtcgattttgggcccgaaccggatgctcaaccaacaacggacagtttact |
27389135 |
T |
|
| Q |
485 |
tgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaacaaacgggg |
584 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||||| ||||| ||||| || || ||| |||| || | |
|
|
| T |
27389134 |
tgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggcgcaatcccaccagcaactttggttgaaattacagtggcatcaaatggag |
27389035 |
T |
|
| Q |
585 |
gacaagatttct |
596 |
Q |
| |
|
|||||||||||| |
|
|
| T |
27389034 |
gacaagatttct |
27389023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 272 - 596
Target Start/End: Complemental strand, 27410303 - 27409979
Alignment:
| Q |
272 |
tatgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaa |
371 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |||| ||| ||||||||||||||||| || ||| || |||| ||||| |||||| |
|
|
| T |
27410303 |
tatgcagtggttggaggagccaaggtgacattcacgaatagatgtggatatactgtatggccaggaacctttactacagctcaaacccctcaattatcaa |
27410204 |
T |
|
| Q |
372 |
cgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaa |
471 |
Q |
| |
|
| |||||||| ||||||||| ||||| || || ||| ||||||| || ||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
27410203 |
caacaggttttgagttgggacaaggagtgacgtactcggtgaaccttccttcttcatggtctggtcgattttgggcaagaaccggatgctcaatcaacaa |
27410104 |
T |
|
| Q |
472 |
tggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgta |
571 |
Q |
| |
|
| ||||||||| |||||||| |||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||| || || ||||| ||| | |
|
|
| T |
27410103 |
agaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggcgcaatcccaccagcaactttagttgaaattaccatg |
27410004 |
T |
|
| Q |
572 |
gcaacaaacgggggacaagatttct |
596 |
Q |
| |
|
||| |||| || ||||||||||||| |
|
|
| T |
27410003 |
gcatcaaatggaggacaagatttct |
27409979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 468
Target Start/End: Complemental strand, 27455277 - 27455087
Alignment:
| Q |
276 |
cagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacattaactggagaccaaaaacctcagctatcaacgac |
375 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| |||||||| | |||||| | || ||| |||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
27455277 |
cagtagttggaggagctaaggtgacattcaccaataagtgtgaataaattgtatgactagaaacgttaactagagac-aaaaacctcagctatgaacgac |
27455179 |
T |
|
| Q |
376 |
aggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaa |
468 |
Q |
| |
|
| ||||||| ||||||||| |||| || |||||||||||||||||||||||||| || ||| ||||||| ||||||| |||||||| |||||| |
|
|
| T |
27455178 |
aagtttcgacttgggatctagagt-actatttcagtggaccttccatcaccatgatcaggttgattttgaggccgaatcggatgctccaacaa |
27455087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 99 - 261
Target Start/End: Original strand, 27443282 - 27443443
Alignment:
| Q |
99 |
ccatatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaatt-- |
196 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||| ||| ||||||||||||| |
|
|
| T |
27443282 |
ccatatccaaaatgacaagcactcgtgttgctctatgccttagttttgcattcctcttctatggtat----atatatcactactcaactacattaattaa |
27443377 |
T |
|
| Q |
197 |
-ttccatataattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
261 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
27443378 |
tttccatatgattaatcaattcatttagctaagtaaatttttcttcttgcgcttaataaattcatt |
27443443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 27208246 - 27208086
Alignment:
| Q |
101 |
atatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatacataactacattaattttcc |
200 |
Q |
| |
|
||||||||||||| ||| |||||||||| | ||| |||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
27208246 |
atatccaaaatgaagtgcaaccgtgttgctttatgctttagctttgcattcctcttctatggtat----atatatcagtactcaactacattaattttcc |
27208151 |
T |
|
| Q |
201 |
atataattaatc----aattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
261 |
Q |
| |
|
||||| |||||| |||||| |||||| |||| ||||||||||||| | |||||||||||||| |
|
|
| T |
27208150 |
atatagttaatccattaattcatttagcttagtttatttctcttcatgtggttaataaattcatt |
27208086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 27443189 - 27443241
Alignment:
| Q |
11 |
gaagcagagaacaacttcatcaatcaccttcaaacagcaaaatacaatcgaaa |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27443189 |
gaagcagagaacaacttcatcaatcaccttcaaacagcaaactacaatcgaaa |
27443241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 274 - 594
Target Start/End: Original strand, 27415756 - 27416080
Alignment:
| Q |
274 |
tgcagtggttggaggagctaaggtgacattcacaaatagttgtgaatacactgtatggccaggaacatta-actggagaccaaaaacc--tcagctatca |
370 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||| ||| ||| | |||| | ||| |||||| |
|
|
| T |
27415756 |
tgcagaggttggaggagccaaggtgacattcacgaatagatgtgtatacactgtatggccaggaaccttatacttaggttcaaattacattcaactatca |
27415855 |
T |
|
| Q |
371 |
acgacaggtttcgagttgggatctggagttaccatttcagtggaccttccatcaccatggtctggtcgattttggggccgaa-ccggatgcttcaacaac |
469 |
Q |
| |
|
|| |||||||| ||||||| | |||| || | |||||||||||||| | |||| | || || |||||||| ||||| ||||||||| ||||| |
|
|
| T |
27415856 |
acaacaggttttgagttggaacaaggagaaacgaaatcagtggaccttccttatccattggcttatcaattttgggcccgaaaccggatgctcaaacaat |
27415955 |
T |
|
| Q |
470 |
aatggaaagtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccg |
569 |
Q |
| |
|
|| ||||| ||||| |||||||| | ||||||| ||||||||||| | ||||| ||||||| || ||| |||||||||||||||| || || | | |
|
|
| T |
27415956 |
aacggaaattttagttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtgctgacgtaattacaccagcaacattggttgacattaaag |
27416055 |
T |
|
| Q |
570 |
tagcaacaaacgggggacaagattt |
594 |
Q |
| |
|
| ||| |||| || ||||||||||| |
|
|
| T |
27416056 |
tggcatcaaatggaggacaagattt |
27416080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 27221654 - 27221602
Alignment:
| Q |
11 |
gaagcagagaacaacttcatcaatcaccttcaaacagcaaaatacaatcgaaa |
63 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
27221654 |
gaagcagagaacaacttcatcaatcacttacaaacagcaaactacaatcgaaa |
27221602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 27455409 - 27455314
Alignment:
| Q |
170 |
atatatcaatacataactacattaattttccatat----aattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
261 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||| ||| |||||| |||||| |||| ||| ||||||||| | |||||||||||||| |
|
|
| T |
27455409 |
atatatcaatacccaactacattaattttccatatagtaaatcaattaattcatttagcttagtttattgctcttcatgtggttaataaattcatt |
27455314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 478 - 596
Target Start/End: Complemental strand, 27454844 - 27454726
Alignment:
| Q |
478 |
gtttagctgtgccaccgccgattgtgcctctggtcaagtcggctgcaacggtgctggcgcaatcccaccagcaacattggtagaaataaccgtagcaaca |
577 |
Q |
| |
|
|||||| || ||||| ||||||||| ||| |||||| | || | ||| | ||| || |||||||||||||||||||||||||||||||| || || || |
|
|
| T |
27454844 |
gtttagttgggccactgccgattgtatctccggtcaaatgggttccaatgatgcaggtgcaatcccaccagcaacattggtagaaataacggttacatca |
27454745 |
T |
|
| Q |
578 |
aacgggggacaagatttct |
596 |
Q |
| |
|
|| || |||||||||||| |
|
|
| T |
27454744 |
gacaggagacaagatttct |
27454726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 27208330 - 27208277
Alignment:
| Q |
10 |
agaagcagagaacaacttcatcaatcaccttcaaacagcaaaatacaatcgaaa |
63 |
Q |
| |
|
||||| ||||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
27208330 |
agaagaagagagaaacttcatcaatcactttcaaacagcaaactacaatcgaaa |
27208277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 261
Target Start/End: Complemental strand, 27433332 - 27433166
Alignment:
| Q |
100 |
catatccaaaatgacaagcacccgtgttgctctgtgccttagttttgcattcctcttctacggtacgtacatatatcaatac--at--aactacattaat |
195 |
Q |
| |
|
|||||||||||||| | ||||| ||||||| | ||| |||| || |||||||||||||| |||| | |||||||| ||| || |||||||||||| |
|
|
| T |
27433332 |
catatccaaaatgaagaacacccatgttgctttatgctttagcttggcattcctcttctatggta---atatatatcagtactcattcaactacattaat |
27433236 |
T |
|
| Q |
196 |
tttccata----taattaatcaattcacttagctaagttaatttctcttcatgcgcttaataaattcatt |
261 |
Q |
| |
|
|||||||| |||| ||| |||||| |||||| | || ||| ||||||||| | |||||||||||||| |
|
|
| T |
27433235 |
tttccatatagttaataaattaattcatttagcttattttattcctcttcatgtggttaataaattcatt |
27433166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 27390304 - 27390262
Alignment:
| Q |
122 |
cgtgttgctctgtgccttagttttgcattcctcttctacggta |
164 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
27390304 |
cgtgttgctctctgccttagctttgcattcctcttctatggta |
27390262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 122 - 164
Target Start/End: Complemental strand, 27410539 - 27410497
Alignment:
| Q |
122 |
cgtgttgctctgtgccttagttttgcattcctcttctacggta |
164 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
27410539 |
cgtgttgctctctgccttagctttgcattcctcttctatggta |
27410497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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